Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14 105 5e-18 seq4 96.9 2e-15 seq22 93.3 3e-14 >seq14 Length=171410997 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||||| ||||| ||||| ||||| || || ||||| || | Sbjct 137735390 AATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTTGAACCCTC 137735331 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| |||| || | || || ||||| | || || ||||| Sbjct 137735330 AGACACTATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCA 137735271 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| || ||||| || ||||| Sbjct 137735270 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATAGCCGGACTTTGTCTGACTACAA 137735211 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| ||||| |||||||| || ||| | || || || Sbjct 137735210 CATTCAAAAGGAGTCCACCTTTCATCTGGTATTGAG 137735175 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||| ||| | ||| | ||||||||||| || | Sbjct 64264054 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAACCCATCTCGCTCGAAGTTGAACCCTCA 64263995 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | | | ||||| Sbjct 64263994 GACACTATAGAAAATGTAAAGGCCAAGATCTAGGATAAGGAAGGACTTGCTCTTGATCAG 64263935 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || |||||||| | | ||||| || |||||| Sbjct 64263934 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCTGGACTTTGTCTGACTACAAC 64263875 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 64263874 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAG 64263840 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 144150577 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 144150518 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || || || || ||||| || | || || || Sbjct 144150517 AGTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 144150458 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || || ||||| | |||||| | |||||| Sbjct 144150457 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTAC 144150398 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 144150397 AACATCCAGAAAGAGTCGAC 144150378 >seq4 Length=117747451 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| | ||| || || |||||||| || || || || Sbjct 57051388 AACATGCAGATCTTCGTAAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCC 57051329 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 57051328 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 57051270 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||| || |||||||| ||||| || | ||||| | ||| || Sbjct 57051269 CCAGCAGAGGCTGATATTAGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTA 57051210 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 57051209 CAACATCCAGAAAGAGTCCACCTTGCA 57051183 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || |||||||| || || || || Sbjct 92566868 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCC 92566809 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 92566808 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCCTCCCACCTGA 92566750 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||| ||||||||||| || || || | | ||| | ||||| Sbjct 92566749 CCAGCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTA 92566690 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 92566689 CAACATCCAGAAAGAGTCCACCTTGCA 92566663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 57378720 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 57378779 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || ||||| || | || || || Sbjct 57378780 AGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 57378839 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | ||||| | |||||| Sbjct 57378840 CANCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTAC 57378899 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 57378900 AACATCCAGAAGGAGTCAAC 57378919 >seq22 Length=147524369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| | ||| || || |||||||| || || || || Sbjct 136850953 AACATGCAGATCTTCGTGAAGACCCTGANGGGCAAGACCATCACTCTTGAGGTCGAGCCC 136851012 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || | Sbjct 136851013 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTAA 136851071 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||| || |||||||| ||||| || | ||||| | ||| || Sbjct 136851072 CCAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTA 136851131 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 136851132 CAACATCCAGAAAGAGTCCACCTTGCA 136851158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996574166296