Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2669 320 1e-82 seq18 212 5e-50 seq6 96.9 3e-15 seq5 95.1 1e-14 seq8 93.3 4e-14 >seq2669 Length=49141 Score = 320 bits (354), Expect = 1e-82 Identities = 599/869 (69%), Gaps = 16/869 (2%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||||||| || ||||| || || || ||||||| || ||||||||| Sbjct 22144 TGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTCC 22203 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACA--AGC 4376 || | ||||||||||| | | || || | || || | || |||| || | Sbjct 22204 ATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCC---AGCTCCAGCATA 22260 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | ||| || ||||| || |||||||| |||| | ||| || ||||| || | Sbjct 22261 AGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGC 22320 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 |||| || | || | | | ||||| || ||||| | ||| | |||||||| Sbjct 22321 TTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATTATC 22377 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 ||| | | | | | | ||| || | ||| | || |||| | || ||||| Sbjct 22378 TCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAG 22437 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| |||||||| ||||| || || || ||||| || | || ||||| Sbjct 22438 TCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATC 22497 Query 4617 AAACCTCTCTTT-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | ||| || ||||| ||||| | ||||| || || |||||||| || ||||| Sbjct 22498 AGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTC 22557 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATT 4734 ||| |||||||| || || | || || ||| ||| ||||||| | |||| Sbjct 22558 TACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCT-CTTTGTCCCCAGTCCAGC 22616 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-AT 4793 || ||||||| ||| || ||||| || || || || || | ||||| || || | || Sbjct 22617 GCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGAT 22676 Query 4794 TTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | || ||| | |||| |||| ||| |||||||| || || | || ||||||||||| Sbjct 22677 ATTCTCTTTCCT--TGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGA 22734 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 ||||| ||||| || ||||| || || || || || || | || ||||| |||||||| Sbjct 22735 GTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAAC 22794 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | ||||| || || ||||| || || ||||| || ||||| |||||||| || Sbjct 22795 TTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAA 22854 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 |||| ||||||||||||||| | || || || || || | |||||| | | Sbjct 22855 AGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAAT 22914 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||| || | | || || || || |||||||||| || || || ||||| |||||||| Sbjct 22915 ATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACAT 22974 Query 5093 AGACCAAATATCAGGATACTGAATCGGAA 5121 ||| |||||| | |||| || |||| Sbjct 22975 CTGCCAGATATCATGGTACTCGATGGGAA 23003 >seq18 Length=146158383 Score = 212 bits (234), Expect = 5e-50 Identities = 504/747 (67%), Gaps = 26/747 (3%) Strand=Plus/Plus Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 || |||||||| || ||||| |||| | |||||| || | || | | ||||||| Sbjct 66703187 GCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGAGTGTCACAGGC 66703246 Query 4446 AGCGCGTATGTCAAAAAC---TCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTT 4502 | || | | | | | || || ||||| | || | | |||||||| |||||| Sbjct 66703247 AAGGCATCCATGAGGATCCCCTCCTGCTCTATCCTAACCTCGTTGGTGATTATTTCTTTT 66703306 Query 4503 ATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAA 4562 | | | | || ||||| || | ||| | || |||| | | |||| || || Sbjct 66703307 ACTCTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGTAGACAAAGTCCCAG 66703366 Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAG-AAAACGTTAATCCGGGCATTAAACC 4621 || ||||| |||||||||||||| || || || | |||| || | || ||||| | || Sbjct 66703367 TGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCCGGCATCAGTCC 66703426 Query 4622 TCTCTTT-TTAAGCCAAAATATAGCGGCAAATGACCCAG-AAAAGAATATGCCTTCTACG 4679 || ||| || ||||| ||||| | ||||| || |||| ||||||| || ||||||| Sbjct 66703427 -CTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGCTTCTACC 66703485 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAA 4738 |||||||| || || | ||| | | | |||| ||||||| | |||| | || Sbjct 66703486 GCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCT-TCTTTGTCCCCAGTCCAATGCAA 66703544 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTT 4795 ||||||| ||| ||| | || || ||||| | ||||| || || | ||| Sbjct 66703545 GGCCCAGTCAGC------CTTCTCACA-GGCATTGTTTCAATAGCATTGAAAAGATATTC 66703597 Query 4796 ACTTTTTTCAAATG-GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 |||| || || | |||| ||| |||||||| || || || |||||||||| ||| | Sbjct 66703598 TCTTTCTT----TGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAGT 66703653 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| || || || | || || || ||||| || | ||| ||||| ||||||| || Sbjct 66703654 GTATGCTTCTCATGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTTGAATTT 66703712 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | | ||||| || || |||||| | || | ||| || ||||| |||||||| || | Sbjct 66703713 CTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAAGAAAG 66703772 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| || |||| |||||| | || || || || | || |||||| | | || Sbjct 66703773 CCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTTCCCAGTGCTG-ATAT 66703831 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || ||| |||||||||| | || || ||||| ||||||| Sbjct 66703832 CCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTGTACATCT 66703891 Query 5095 ACCAAATATCAGGATACTGAATCGGAA 5121 ||| |||||| | |||| || |||| Sbjct 66703892 GCCAGATATCATGGTACTAGATGGGAA 66703918 >seq6 Length=112758220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| || || || ||||| |||||||||||||| || || || |||| || | Sbjct 9090747 CAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAGTGTAAGG 9090688 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | || || ||||| ||| | | ||||| || || |||||||| Sbjct 9090687 CCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCAAAAGAACCGGAAAAGAAG 9090628 Query 4668 ATGCCTTCTACGGCGGCAAACGCTAC 4693 || |||||||||| |||||| || || Sbjct 9090627 ATTCCTTCTACGGTGGCAAAGGCCAC 9090602 >seq5 Length=114734182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || ||||| || | || ||||| | || | || || Sbjct 21262835 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 21262776 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| || ||||||||||||||||| || Sbjct 21262775 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 21262716 Query 4692 AC 4693 || Sbjct 21262715 AC 21262714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| |||||||| || || || || ||||||||||| ||||| ||||| || Sbjct 21261587 GGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATG 21261528 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 21261527 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 21261470 >seq8 Length=97450195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||||||||| || |||| Sbjct 32807988 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAAA 32808044 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| ||||| | ||||| || |||||||| || | || || | Sbjct 32808045 TGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 32808104 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 32808105 ACAAGTCAAC 32808114 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || ||||| || || |||||||| ||||| |||||||| |||| Sbjct 32788819 CAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAA 32788878 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | || |||||||||||||| ||||| Sbjct 32788879 TGTTCTCCATAAAATCAAAGGGATT 32788903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033142842946