Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 >seq19 Length=145277780 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 24628056 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24628115 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || ||||| |||| Sbjct 24628116 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24628175 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || |||||||| | ||| ||||| ||||| || ||||| ||| Sbjct 24628176 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 24628220 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || ||||||||||||| ||||||||||||||||| || || || || |||||||| Sbjct 24632907 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 24632966 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | || ||| |||||| |||||||| ||| || ||||| || Sbjct 24632967 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATC 24633026 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 24633027 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 24633074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492960347222