Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2669 403 2e-107 seq18 226 4e-54 seq22 114 2e-20 seq4 113 6e-20 seq5 102 1e-16 seq6 93.3 6e-14 >seq2669 Length=49141 Score = 403 bits (446), Expect = 2e-107 Identities = 651/928 (70%), Gaps = 15/928 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || || ||||| || || || || || ||||| | ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 ||| | ||||| ||||| || | | |||| || ||||| || | || || || Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 || || || || || || ||||| ||||||| ||||||||||| || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || | ||||||| || ||||| || || || | || | |||||| Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATTATCTC 22379 Query 48092 TGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | ||| | | ||| ||| || ||| || || || ||||| | || ||||| Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAGGCAAAG 22437 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 ||||| || | ||| || ||||||||||| | || || |||||||| || || ||||| Sbjct 22438 TCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATC 22497 Query 48210 AGTCCAC-GTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || || | |||| |||||||| ||||| | || ||||| || |||||||| || ||||| Sbjct 22498 AGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTC 22557 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---TCCACCG 48325 ||| || ||||| || || | ||||| || | || || |||| |||| || Sbjct 22558 TACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCG 22617 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||| | Sbjct 22618 CAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATA 22677 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 | | |||| ||| |||||||| |||||| || || | |||| |||||||| ||||| Sbjct 22678 TTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTG 22737 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 || ||||| || || || || || || || ||||| | || ||||| | || || || Sbjct 22738 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTC 22797 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | |||||| || |||| |||||||| ||||| |||||||| || ||||| || || Sbjct 22798 TTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGC 22857 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 | ||||| ||||||| | | || | || |||| | ||||| | ||||| Sbjct 22858 CAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATC 22917 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685 || || | || || || || || |||||||| || ||||| ||||| || ||||| | Sbjct 22918 CTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTG 22977 Query 48686 CCATATATCACTGTATTGGATTGGGAAA 48713 ||| |||||| ||| | || ||||||| Sbjct 22978 CCAGATATCATGGTACTCGA-TGGGAAA 23004 >seq18 Length=146158383 Score = 226 bits (250), Expect = 4e-54 Identities = 403/576 (70%), Gaps = 19/576 (3%) Strand=Plus/Plus Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAA-TGTGAGACCG 48203 |||| || || || | ||| || ||||| ||||| | || || ||||| ||| || || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA-GAATAT 48262 ||||| ||||| |||| |||||||| ||||| | || ||||| |||||||| ||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---T 48319 ||||||| || ||||| || || || ||| | || | ||||| |||| | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | ||||| |||||||||| |||| ||||||||||| |||||||| || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAA 66703588 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| | | | |||| |||| |||||||| |||||| || || | ||||||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 48440 GGAGTGAAT-ATTTTCAATTGCCA-TCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||| || || ||| ||||| | || || || | |||||| | || ||||| | Sbjct 66703649 AGAGTGTATGCTTCTCA--TGCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACT 66703705 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || | || | |||||| || |||| || |||| | ||| |||||||| || ||| Sbjct 66703706 TGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCA 66703765 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | | || ||||||| | | || | || ||| | ||||| Sbjct 66703766 AAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTTCCCAGT-G 66703824 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 ||||||| || || | || || || ||||| |||||||| | ||||| ||||| | Sbjct 66703825 CTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTG 66703884 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAA 48713 ||||| | ||| |||||| ||| | || ||||||| Sbjct 66703885 TACATCTGCCAGATATCATGGTACTAGA-TGGGAAA 66703919 >seq22 Length=147524369 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | || Sbjct 105169244 TGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 105169185 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| || ||||| |||||||| ||||| || || | | |||||| Sbjct 105169184 TCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 105169125 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 105169124 TTTCTTATACCAT 105169112 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || ||||||||||| ||| Sbjct 105156131 GTCCCGGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 105156072 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || || || || ||||| || || | || | ||||||| Sbjct 105156071 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 105156012 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || ||||| ||||||||| || Sbjct 105156011 ATGTGCTGTGGTCTTTCAGCC 105155991 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || |||||||||||||| ||||| || || ||||| || | || |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | || || | | ||| || | ||||| |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 ||||| | ||| |||||||| || || | || || ||||| ||||| || ||||||| Sbjct 105166029 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTG-GCTAGCTCACAGCTGGCTTCCAG 105165971 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| || ||||| ||||| || |||| |||||| | || ||||| || || Sbjct 105165970 GGCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTC 105165911 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | || || || ||||||||||| || || || ||||| ||||| || Sbjct 105165910 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGG 105165851 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 105165850 CCGATGGCGTTTATTTGA 105165833 >seq4 Length=117747451 Score = 113 bits (124), Expect = 6e-20 Identities = 281/420 (67%), Gaps = 14/420 (3%) Strand=Plus/Plus Query 180918 TTGGCTGATGAATTGTTCAACAGGGCATCACTTCAGTTAAATGAAACATTCAACTTTACT 180977 ||||||| || ||| || |||| | || | |||||| | ||||| ||| |||||| Sbjct 78042560 TTGGCTGCTGCATTTTTTAACAAGACAGAATTTCAGTACGAGGAAACTTTCCCCTTTACC 78042619 Query 180978 AGATCTGTCAATGTTAAAGTTACA--GCTAGTTCAGGTAAACAACTAAGAACACGTCTTA 181035 ||||| ||||| |||||||| ||| ||||| |||| || ||| ||| | | Sbjct 78042620 AGATCCAGATATGTTGAAGTTACATTGCT--TTCAGCGAAACGCCTGCGAAAACGCATCA 78042677 Query 181036 AGCAACAACTTCCTTCTACAGTAGCATCTTTTGCCAATACAGATGGTGGATATTTGTTCA 181095 | | | || ||| || || | | ||||| || |||||||| |||| |||||||| Sbjct 78042678 AAGAGCTCCTCCCTCAAACTGTTTCTGCATTTGCAAACACAGATGGGGGATTTTTGTTCA 78042737 Query 181096 TTGGGTTGGATGGTAAGACGAATAAAGTAATTGGATTCAATGCTAGTCAAGAAT-ACATT 181154 |||| |||||||| || || | || | ||||| || | || | |||| | || || Sbjct 78042738 TTGGTTTGGATGGCAAAACCCAGCAAATTATTGGTTTTGAAGC-AAAGAAGAGTGACCTT 78042796 Query 181155 GATATG-ATAGGCTATGAGATAGAAAAGCGTATTAAAAGACTTCATGTAGTACACTTTTG 181213 | | || ||| ||| ||||||||| || || || | ||| ||||| || Sbjct 78042797 G-TGTGTCTAGAGAGTGAAATAGAAAAGTACATCCAACAGCTGCCTGTCACTCACTTCTG 78042855 Query 181214 TGAGAAAAAAGAGGATATCAAGTACGCATGTAAATTCATAAAGGTATATAGACCAGATGA 181273 |||| | || ||| | ||||||||| || |||||||| | || | | | | | | Sbjct 78042856 TGAGGAGAAGGAGAAGATCAAGTACAAGTGCAAATTCATCGAAGTGCACAAATCCGGAGC 78042915 Query 181274 TGAGAATACATCGACATATGTATGTGCTATCAAAGTGGAGAGATGTTGTTGTGCTGTGTT 181333 || | | ||||||| ||||| ||| ||||||||| | || ||||||||||| Sbjct 78042916 TGTG------TGTGCATATGTGTGTGCGCTCAGAGTGGAGAGGTTCTGCTGTGCTGTGTT 78042969 >seq5 Length=114734182 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | || || |||||||| || || ||||| || || ||||| ||| Sbjct 21262835 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 21262776 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| || ||||||||||| ||||| || Sbjct 21262775 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 21262717 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 21263925 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 21263866 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || || ||||| || || || || || ||||| | ||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 47912 CATAAAATCAAATGGATT 47929 ||| || ||||| ||||| Sbjct 21263805 CATGAAGTCAAACGGATT 21263788 >seq6 Length=112758220 Score = 93.3 bits (102), Expect = 6e-14 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| || | ||||| ||||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || || ||||| || || || || || ||||| | ||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 ||| || ||||| ||||| || | | |||| || ||||| || Sbjct 9090422 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACC 9090466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641343215680