Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2669 392 5e-104 seq18 197 2e-45 seq22 118 2e-21 seq6 89.7 7e-13 seq5 86.0 9e-12 seq8 84.2 3e-11 >seq2669 Length=49141 Score = 392 bits (434), Expect = 5e-104 Identities = 645/925 (70%), Gaps = 10/925 (1%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 46340 ||| ||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| || ||||| || || || || || ||||| | ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 ||| | ||||||||||| || | |||| || ||||| || | || || || Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 || || || || || || |||||| ||||||| ||||||||||| ||||| || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGA 46580 || || | ||||||| || ||||| || || || | || | | |||||| Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATTATCTC 22379 Query 46581 TGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640 | | || | | ||| ||| || | || || || ||||| | || ||||| || Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 22439 Query 46641 ACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAG 46700 ||| || | || || ||||||||||| | || || |||||||| || || ||||| || Sbjct 22440 ACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAG 22499 Query 46701 TCCACGCTTT-TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 46759 || | ||| |||||||| ||||| | || ||||| || |||||||| || ||||||| Sbjct 22500 CCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTA 22559 Query 46760 CAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTT 46816 |||| || || || |||| | ||||| || | || || || | | |||| | Sbjct 22560 CAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGCA 22619 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 ||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||| | | Sbjct 22620 AGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATATT 22679 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | |||| | |||||||| || || || || | |||| |||||||| || || | Sbjct 22680 CTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTA 22739 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 ||||||| || || || || || || || ||||| | || || |||| || || ||| Sbjct 22740 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTT 22799 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | |||||| || ||| |||||||| ||||| |||||||| || ||||| || |||| Sbjct 22800 GGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCA 22859 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 ||||| ||||||| | | ||||||| |||| | ||||| | ||||| | Sbjct 22860 GAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCCT 22919 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 | || | || || || || || ||||| || || ||||| ||||| || ||||| | || Sbjct 22920 TGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCC 22979 Query 47177 ATATATCACGATATTGGATCGGAAA 47201 | |||||| | || | ||| ||||| Sbjct 22980 AGATATCATGGTACTCGATGGGAAA 23004 >seq18 Length=146158383 Score = 197 bits (218), Expect = 2e-45 Identities = 394/574 (69%), Gaps = 16/574 (3%) Strand=Plus/Plus Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAA-TGTGAGCCCA 46692 |||| || || || | || || ||||| ||||| | || || ||||| ||| || || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA-GAATAT 46751 ||||| ||||| | || |||||||| ||||| | || ||||| |||||||| ||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AAT 46808 ||||||| || || || || |||| || ||| | || | || || || | | | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| ||||| |||||||| | |||| ||||||||||| |||||||| || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAA 66703588 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 ||| | | | |||| | | |||||||| || || || || | ||||||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 46929 TGAATGAATGTTTTCAATAGCCA-TCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 || || ||| || || |||| | || || || | |||||| | || || |||| | Sbjct 66703649 AGAGTGTATGCTTCTCAT-GCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACTT 66703706 Query 46988 GTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | | ||| | |||||| || ||| || |||| | ||| |||||||| || |||| Sbjct 66703707 GAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAA 66703766 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 | || |||| | || ||||||| | | ||||||| ||| | ||||| Sbjct 66703767 AGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCTTCCCAGT-GC 66703825 Query 47108 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTAT 47167 ||||||| || || | || || || ||||| ||||| || | ||||| ||||| | | Sbjct 66703826 TGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCTGT 66703885 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAA 47201 |||| | ||| |||||| | || | ||| ||||| Sbjct 66703886 ACATCTGCCAGATATCATGGTACTAGATGGGAAA 66703919 >seq22 Length=147524369 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | || Sbjct 105169244 TGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 105169185 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| || |||||||||||||| ||||| || || | | |||||| Sbjct 105169184 TCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 105169125 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 105169124 TTTCTTATACCAT 105169112 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| |||||||| ||||| || ||||||||||| ||| Sbjct 105156131 GTCCCGGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 105156072 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 105156071 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 105156012 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| |||| ||| Sbjct 105156011 ATGTGCTGTGGTCTTTC 105155995 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || |||||||||||||| ||||| || || ||||| || | || |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | || || | | ||| || | ||||| |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || ||||| || || || || || Sbjct 105151167 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCTATCCTTGCTGCCAGGATG 105151108 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || ||| | || || || | || || | | Sbjct 105151107 GCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCAGT 105151048 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || ||||||| ||||| || |||||||||| Sbjct 105151047 TCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCATGG 105151002 >seq6 Length=112758220 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 46340 ||| ||||| |||| || | |||| ||| ||| || | ||||| ||||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| || ||||| || || || || || ||||| | ||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 46401 CATAAAATCAAACGGATT 46418 ||| || ||||||||||| Sbjct 9090422 CATGAAGTCAAACGGATT 9090439 >seq5 Length=114734182 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 46340 ||| ||||| |||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 21263925 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 21263866 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| || ||||| || || || || || ||||| | ||| |||||||| Sbjct 21263865 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 21263806 Query 46401 CATAAAATCAAACGGATT 46418 ||| || ||||||||||| Sbjct 21263805 CATGAAGTCAAACGGATT 21263788 >seq8 Length=97450195 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| |||||||| |||| |||||| | Sbjct 32812216 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGCTTATACATTCTCCAGATATCAGG 32812275 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 ||| ||||| ||||| || ||||| Sbjct 32812276 ATACTGGATTGGAAAGATGACAAA 32812299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906221267840