Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq2171 580 7e-161 seq80 306 2e-78 seq584 233 1e-56 >seq2171 Length=2622 Score = 580 bits (642), Expect = 7e-161 Identities = 790/1098 (72%), Gaps = 6/1098 (1%) Strand=Plus/Minus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 || || |||||||| || || || | ||||||||||| | || | ||| | || ||| Sbjct 1803 CCCGCGTAGTTATCGAAACGCGACCACTGGCCGTTAAAGGTCAGGCGCACGGAACCGATT 1744 Query 96755 GGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGG 96814 ||||| || |||||||| || | ||| | |||||||| || |||| ||||| | | | Sbjct 1743 GGGCCGTTACGTTGCTTACCTAAAATAATTTCGGCAATCCCTTTCAGATCGCTGTTCTCG 1684 Query 96815 TGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCT 96874 |||||||| || || || || | ||||| |||||||| || |||||||| || | || Sbjct 1683 TGATAAACCTCATCACGGTAGATGAACATAATCAGGTCGGCATCCTGCTCGATGGAGCCA 1624 Query 96875 GATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTA 96934 || ||||| | || || || ||||| |||||||| |||||||| || || ||| || Sbjct 1623 GACTCACGCAGGTCGGAGTTGACCGGACGTTTGTCGGCACGCTGCTCCAGGCTTCGGTTC 1564 Query 96935 AGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGA 96994 | || |||| |||||||| || ||||| | || ||||||||||| |||||||| || Sbjct 1563 AACTGCGACAGCGCCACCACAGGCACTTGCAGCTCTTTCGCCAACGCTTTCAGTGAACGG 1504 Query 96995 GAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGC 97054 || || || ||||| |||||||| ||||| || || || || ||||| | ||| Sbjct 1503 GAGATTTCAGCAATCTCCAGCGTACGGTTGTCGGACAAAGAGGGCACACGCATCAACTGC 1444 Query 97055 AGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGG 97114 |||||||| ||||| |||| ||| | ||| ||| || ||| |||||| || ||| Sbjct 1443 AGGTAGTCAATCATGATCAGGCTAAGGCCATCATGCTCACGGAAAATACGACGCGCACGG 1384 Query 97115 GAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCC 97174 ||||||| || || ||||||||| || ||||||||||| | ||||| |||| ||| Sbjct 1383 GAACGTACTTCGGTTGGCGTCAGGCCGGAGGAGTCATCAATGTACATATTGCGCTTCTCC 1324 Query 97175 AACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTT 97234 | || ||| ||||| | || |||| |||||||| |||||||| | ||| || || || Sbjct 1323 AGCAAAATGCCCATGGTGCTGGAAATACGCGCCCAGTCCTCGTCATCAAGCTGGCCGGTA 1264 Query 97235 CGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGG 97294 || ||||| || || |||||||| | || || ||||| |||||||| | ||||| | Sbjct 1263 CGGATACGTGTTTGGTCAACGCGCGACAGCGACGCCAGCATACGCATCATGATCTGGTTG 1204 Query 97295 CTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCG 97354 | ||||| |||||||| || | || ||| || || || | | || || | |||| Sbjct 1203 CCTGGCATTTCAAGGCTGAAGATCAGTACCGGTTTTTCCTGCGTCATCGCAGCGTGTTCG 1144 Query 97355 -ACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAG 97413 || || ||||| || || ||||| || ||||| || || || ||||| || ||||| || Sbjct 1143 CACAAG-TTCATGGCGAAGGTGGTTTTACCCATCGAAGGACGAGCGGCAACGATGATCAG 1085 Query 97414 ATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGTCC 97473 ||| ||| || | ||||| || |||||||||||||| | | |||||||| | || Sbjct 1084 ATCCGACTTTTGCAAACCTGCGGTTTTCTTATTGAGATCCTGATAGCCGGTATCCACCCC 1025 Query 97474 CGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAG 97533 || || ||||||||||| ||||| |||||| || ||||| | ||||| | || || Sbjct 1024 GGTAACGCCATCATGCGGCTGCTGATACAACTGCTCAATGCGTGCAACCGTATCCTCCAG 965 Query 97534 AATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTTG--TCGTTTTTCAGCTATTTCA 97591 |||| ||||| |||| || | || | || | || || ||||| || |||| Sbjct 964 GATGCGTTCGATACCTTTCGGGC--CTTCATCTTTGCTGGCGCGATTTTCCGCAATTTGG 907 Query 97592 AAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATAT 97651 || || || ||| |||| ||| ||||| || | |||| || || | | | |||| Sbjct 906 AATACNCGTGATTCAGCCAGATCGAGCAAGTCTTCACTGCTGCGCCCTTGCGGATCATAA 847 Query 97652 CCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGA 97711 || || ||||| || ||||| || || || ||||| ||||| || ||||| ||||| || Sbjct 846 CCGGCGTCAGCAATCTCATTAGCCACCGAGATCATCTCACGCACTACCGCACGTTCGCGT 787 Query 97712 ACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCA 97771 |||||||| |||||||| | ||| || || || || || || || || || | ||| || Sbjct 786 ACGATATCTGCATAAGCGCCAATGTTGGCAGCACTTGGGGTATTTTTCGATAGCTCTGCC 727 Query 97772 AGGTACGCAAAACCACCG 97789 | || || || |||||| Sbjct 726 AAATAGGCGAAGCCACCG 709 >seq80 Length=7995 Score = 306 bits (338), Expect = 2e-78 Identities = 671/989 (68%), Gaps = 30/989 (3%) Strand=Plus/Minus Query 58583 TAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACA---GGAATTGCAGCAGC 58639 |||||||| || || |||||||| |||||||| ||||| |||| | | |||| || Sbjct 1277 TAATCGCCTGTCAGATTGATGTGTTCCCAGCCTAGCGGGGACAAATGCGACAGCAGTTGC 1218 Query 58640 TCGCCG---TCCACCGGCTTGCCGGCCTC-GACCAACCCCTGGGTGGCGCGTTCCAGGTA 58695 ||| | | ||| ||| | || || || || | | | | | ||||| || Sbjct 1217 TCGTTGATCTTCACTCCCTTAC--GCTTCAGAGCATCGACCG-----CTCTTTCCATATA 1165 Query 58696 CACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCG 58755 || || |||||||| || || || |||| || | || || ||||| || |||| Sbjct 1164 TACGGTATTCCACAGGGATATGGCAGCTGTCAGAAGCGTCAGTCCACTGGCGCGATAGCT 1105 Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815 ||| | || | || ||||||||||| || || |||| | || ||||| | || Sbjct 1104 CTGATTTTCCGGTTTTCGGTCCCTGATTTCTCCCAGCCGGTGCATAAATACCGCTCGCGC 1045 Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| ||| || || |||||||| ||||| || || || || || || |||||| || Sbjct 1044 CAGCGCGTTACGGGCTTCACCTTTATTCAGCCCCGCCTGTACCCGCCGACGCAGTGCAGG 985 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | | | |||||| || || |||||||| || || || ||||| | || | || || Sbjct 984 ATCGCGGAACCAGTCGAGCATAAACAGCGTTCGTTCAATACGGCCAATTTCCCTCAATGC 925 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGT 58995 ||| |||||||| || ||||||||| | ||||| ||||||||| || || || Sbjct 924 TTTGGCTAGTCCGTTTTGTTTGGGGTAGCTGGCAAGCTTTTTCAGCATCAGGGAAGCCGT 865 Query 58996 GACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTGGGCACGCAC 59055 ||||| |||||||| |||||| || |||||||| | || |||||| | Sbjct 864 CACGGTTCCCTGCTTTATCGAGGCCGCAAGGCGCAGCACTTCACGCCAGTGAATTTCGAT 805 Query 59056 GTGCTTGATGTTCAGGGTGC-CGCCGAT--CAGCGGGCGCAACGTCGGGTA--GGCTTGC 59110 | || | ||||||||| || ||| ||| | | | || | |||| || || Sbjct 804 CTCTTTCAGATTCAGGGTGGACGTTGATATCAGTGACTGAAGCGCCCGGTACTGGTCCGC 745 Query 59111 ACGCCCTGCGGCACGTACAGCTTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGG 59170 |||| | | ||||||| | ||| ||| || | ||| ||||| ||| Sbjct 744 TTTCCCTTTGATAA--ACAGCTTCTTGTCGTGGAGATCCCTGATTCGCGGACAGAACGCA 687 Query 59171 AAGCCTAGCAGGTGCATCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAG 59230 || || ||||| ||||||||||||||||| ||||||||||| || || || |||||||| Sbjct 686 AACCCCAGCAGATGCATCAGGGCAAAGACATGATCGGTGAAACCCGCAGTATCGGTGTAA 627 Query 59231 TGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAA 59290 |||||| ||| |||||| |||||||| |||| ||| || ||||||| ||| ||| Sbjct 626 TGCTCCCTGATTTCCAGGTCACTTTCGTGGTATAGCAAGCCATCTAGCACATGGGTTGAA 567 Query 59291 TCGCGGACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGG 59350 || | ||| ||||| | | | || |||| || || ||| || || || |||||| Sbjct 566 TCCCTGAC-CCGAC--TGATTATGCAGGTGTAAAATGGACTGTATTGATCAGAAATATGG 510 Query 59351 GTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTCTCG 59410 ||||| ||| | ||||| ||||| || || || ||||| || ||||| | | | || Sbjct 509 GTATAAAACTGACGTCCGGGCTCCTGCCCATATTTTGGGTTAACCTGCCCTGCG-TAGCG 451 Query 59411 CCCCG-GCCACCCGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCA 59469 || | || || | | ||| ||| ||||| || ||||| || || ||||| ||||| Sbjct 450 GCCTGAGCTGCCTGTTCTGAAATTCTGTCCATCTGATGATGACGTTGTCCCGTCTCCCCA 391 Query 59470 G-TGGGCGGCAAAGG-CGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAA 59527 | || || || | | | ||| ||| |||||||| || | ||| || ||| Sbjct 390 GAATACCGTCAGTGGTCTTTTC--CCCTGCGCGTTTACCAGCTCTGCGAGGGCGGCTGAA 333 Query 59528 TAGGTTTCGTCGCGGATGTGCCAGGCTTG 59556 ||||||||||||||||||| ||| || || Sbjct 332 TAGGTTTCGTCGCGGATGTACCATGCCTG 304 >seq584 Length=7709 Score = 233 bits (258), Expect = 1e-56 Identities = 717/1089 (66%), Gaps = 31/1089 (3%) Strand=Plus/Minus Query 58680 TGGCGCGTTCCAGGTACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGC 58739 |||| | ||| | || ||||| |||||||| ||| ||||| |||| || | || | Sbjct 7487 TGGCTCTTTCTATATATACCGTATTCCACAGGGAGATCGCCGCAGTCAGCAATGTCAGAC 7428 Query 58740 CGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGA 58799 | ||||||||||||| ||| | ||| | | |||||| ||||| || || | |||| | Sbjct 7427 CACTGGCCCGGTAGCTCTGATTCTCCAGCCCCCGATCTCTGATCTCACCCAACCGGTGCA 7368 Query 58800 AGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGC 58859 || ||||| | || |||| ||||| ||||||||||| ||||| || || || |||| Sbjct 7367 TAAAGACCGCTCGTGCAAGCGCATTGCGGGCCTCACCTTTATTCAGCCCAGCCTGTACGC 7308 Query 58860 GGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGC 58919 | ||||||||| | | | ||||||||| || ||||| | || ||||| || | Sbjct 7307 GTCGGCGCAGTGATGGATCGCGAAACCAGTCCAGCATAAACAGTGCCCGTTCGATGCGTC 7248 Query 58920 CCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCA 58979 | | || | || ||| || || || || || || || ||| | || || || Sbjct 7247 CGATTTCCCTCAATGCCTTTGCAAGGCCATTTTGTTTAGGATAACTGGCCAGTTTTTTCA 7188 Query 58980 GCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGT 59039 ||| ||||| ||||| || || ||||| || |||||||| || ||||| || | || | Sbjct 7187 TCATGAGCGATGCGGTAACAGTCCCCTGTTTTATCGAGCTTGCGAGGCGAAGTACCTCAT 7128 Query 59040 CCCAGTGGGCACGCACGTGCTTGATGTTCAG-GGTGCCGCCG--ATCAGCGGGCGCAACG 59096 |||||| | | || || | ||||| |||| | | |||| | | | Sbjct 7127 TCCAGTGCGTCTCAATGTCTTTAAGATTCAGTGGTGTTGTGGATATCACAGATTGAAGTC 7068 Query 59097 TCGGGT-AGGCTTGCACGCCCTGCGGCACGTA-----CAGCTTGGTTTCGCCGAGGTCGC 59150 ||| | | ||| || ||| | | || | ||||| ||| || || | Sbjct 7067 CCGGATAACGCT--CA-GCCTTTCCCTTAATAAAAAGCCGCTTG---TCGTGAAGATCCC 7014 Query 59151 GGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGTGCATCAGGGCAAAGACGTGATCGGTGA 59210 |||| | || || || ||| || ||||| |||||||| || || || || || || | Sbjct 7013 GGATCCTTGGGGCAAAAGCGAATCCGAGCAGATGCATCAGCGCGAAAACATGCTCCGTAA 6954 Query 59211 AGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGC 59270 | || || || || ||||| ||||| || ||| || |||||||| ||||| | Sbjct 6953 AACCAGCGGTATCAGTGTAATGCTCTGTAATTTCCAGATCACTTTCGTGGTATAGCAGAC 6894 Query 59271 CGTCGAGCACATAGGTGGAATCGCGGACGCCGACATTCACCACGCGGGTGCTGAACGGCG 59330 |||| || || | |||||| ||||| ||| |||| | | ||| |||| || || Sbjct 6893 CGTCAAGTACGTGGGTGGAGTCGCGCACG-CGAC--TGATCACTTTGGTGTAAAATGGGC 6837 Query 59331 CGTACTGGTCGGAGATATGGGTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGT 59390 ||| || || |||||||| || || | | || || || || ||||| ||| | | Sbjct 6836 TGTATTGATCCGAGATATGCGTGTAAATCTGCACGCCTGGTTCCTGCCCGTATTTCAGAT 6777 Query 59391 TGACGTGCCCGGTGCTCTCGCCC-CGGCCACCCGCGCGGAAGCGCTGGCCATCGGAGGAT 59449 |||| || || | | ||||| | | ||| | || ||| ||| || || || || Sbjct 6776 TGACCTGACCCG-CATAACGCCCGTGACTCCCCACCCGAAAGTTCTGCCCGTCAGACGAA 6718 Query 59450 GAGGTCGTGCCGTCGCCCCAGTGGGC-GGCAAAGGCGTGGCGATACTGGTGGTTGACCAG 59508 || || || || |||||||| || | || | || | | | ||| || ||||| Sbjct 6717 GACGTTGTACCATCGCCCCAAAATGCAGCCAGATGC-CGCTGTTTCTGAGTATTAACCAG 6659 Query 59509 CTCGGCCAAGGCCGCCGAATAGGTTTCGTCGCGGATGTGCCAGGCTTGCAGCCAGGACAG 59568 ||| |||| || || ||||| ||||| || | ||||| |||||| || | | ||| Sbjct 6658 CTCAGCCAGCGCGGCTGAATATGTTTCATCCCTGATGTACCAGGCCTGAATGCCCTCCAG 6599 Query 59569 CTTGGCG--TAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGATC 59626 || || | |||| || || | || |||||||| || |||||||| || ||||| Sbjct 6598 --TGACGATTTTGTCACTCCCGGACAGGATTCGGCCATTTTCGTCAGCCCCAGATTGATG 6541 Query 59627 GCATCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTTGGCCTCGGCCCCGT---CC 59683 |||| | ||||| | || ||| | ||| | |||||||| | || | | || Sbjct 6540 CCATCGGCCAGGATGGTGGTCAGTAATAACTTTCTGTCTTTTG-GTCTGACGTGTTTATT 6482 Query 59684 TTCAAG-TGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTC 59742 || ||| || ||||| |||||| | || || |||||| ||||||| || ||| | ||| Sbjct 6481 TTTAAGATGCGTGAAATGGCGGGTAAAACCGGTCCAGCCGTCCACTTCATCCAGAATTTC 6422 Query 59743 GGTGATCTT 59751 || || || Sbjct 6421 AGTAATTTT 6413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330886448178892