Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-27 seq14 105 1e-17 seq997 87.8 3e-12 >seq1 Length=185492789 Score = 138 bits (152), Expect = 2e-27 Identities = 202/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 140817380 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 140817321 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| || || || |||||||| ||||||||||| || || |||||| Sbjct 140817320 TTAAAACCCACTTCACCTCCAAAGGTGCTAGGCTTCCAGTATTGAGGAGAACAGATGGGA 140817261 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 140817260 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 140817201 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| || |||||||||| | | | ||||| |||| | |||| | Sbjct 140817200 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGATACAGTTCCATGACATCGATG 140817141 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || ||||| || ||||| ||||||| Sbjct 140817140 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 140817095 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || || | | || ||||| || ||||| | | Sbjct 140813991 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGATCCTGGTG 140813932 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| ||||| || |||||||||||| ||| | |||| | | ||||| | Sbjct 140813931 TAGTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 140813872 Query 10028 GGAGGGCTGTCAATCAA 10044 || || ||||||||||| Sbjct 140813871 GGTGGACTGTCAATCAA 140813855 >seq14 Length=171410997 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| ||||| Sbjct 32132750 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCACGTGGGATGC 32132691 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | ||| ||||| | |||||||| |||| | | | | Sbjct 32132690 TCCTCCTTCAGCAGGTCGCACACGCGGTTATGTTCACGAAGCCAGATCGTGGAGAAGAGC 32132631 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| |||| || || ||||||| Sbjct 32132630 ATCAGCCCCGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 32132588 >seq997 Length=100386 Score = 87.8 bits (96), Expect = 3e-12 Identities = 191/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||| ||||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 11277 AAGGGAAACCCCTTCACATTTTTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 11336 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || | ||| ||||| | ||||||||| ||||| |||| || || | || | Sbjct 11337 TTAAAACTCACTTCTCCACTGAAGGTGCTCAGCTTCAGGTACTGGGGAGAACCGACGGGA 11396 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || || | || ||||| | |||||| || || || | || | ||| ||| || ||| Sbjct 11397 TTACCCCTAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTTCCCAAAG 11456 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | |||| |||||| | ||| | | | ||||| || | || |||| | Sbjct 11457 ATAGCATCTGGACAAGGCTTTCCTGCCAGCAGGGCAGGATACAGTTCTATGGCATCGATG 11516 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | | | | || || | | || ||||| || ||||||||||||| Sbjct 11517 GCACTGAAGAGAGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCTG 11562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716848465444480