Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 149 2e-30 seq19 132 1e-25 seq22 123 6e-23 seq25 120 7e-22 seq14 118 3e-21 >seq4 Length=117747451 Score = 149 bits (164), Expect = 2e-30 Identities = 168/223 (75%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| | || |||||||| || || || || || || |||||||| ||| Sbjct 57378714 AAGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAG 57378770 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| |||||||||| ||||| || ||||| ||||| ||||| || | Sbjct 57378771 GTGGA--GCCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCA 57378828 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| || ||||| || | || ||||| ||||| || ||||| |||||||| | || | Sbjct 57378829 TCCCCCCTGACCANCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCC 57378888 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| || || ||||| ||||| || || Sbjct 57378889 TCTCTGATTACAACATCCAGAAGGAGTCAACCCTGCACCTGGT 57378931 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 92566862 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGA--GCCCAGTG 92566805 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| |||| || ||||||| Sbjct 92566804 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGACCAGC 92566745 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || |||||||| |||||||| || ||||| || || | ||||| ||| Sbjct 92566744 AGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAACA 92566685 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 92566684 TCCAGAAAGAGTCCACCTTGCACCTGGT 92566657 Score = 116 bits (128), Expect = 9e-21 Identities = 139/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || ||||| | |||||||| || ||| Sbjct 55387785 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTTTTGAGGTGGA--GCCCAGTG 55387728 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| |||| ||||| ||||| || ||||||||||| ||||| ||||||| Sbjct 55387727 ACACCATCAAGAATGTCAAGGTCAAGATCCAAGACAAAGAAGGCATCCCAGTTGACCAGC 55387668 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || | ||||| || |||||||| || |||||| | || ||| | || || ||| Sbjct 55387667 AGAGGCTGGTATTCGCAGGCAAACAGCTGGAGGATGGACGCACCCTTTCAGACTACAACA 55387608 Query 178102 TCCAAAA 178108 |||| || Sbjct 55387607 TCCAGAA 55387601 Score = 116 bits (128), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || | || || || ||||| || ||||| || || ||| Sbjct 57051382 CAGATCTTCGTAAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 57051325 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 57051324 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 57051265 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || |||||||| || ||||| | || || |||| || ||| Sbjct 57051264 AGAGGCTGATATTAGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACA 57051205 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| ||||| || || |||| || Sbjct 57051204 TCCAGAAAGAGTCCACCTTGCACCT 57051180 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || | || || ||||| || ||||| |||| ||| Sbjct 55519389 CAGATCTTCGTGAAGACCCTGACGGACAAGACCATCACTCTTGAGGTC--AAGCCCAGTG 55519332 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| | ||||| || |||| ||||| ||||| | ||||| | Sbjct 55519331 ACACCATCGAGAATGTCAAGGACAAGATCCAAGACAGTGAAGGCATCCCACTTGACCAAC 55519272 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || | |||| || |||||||| || ||||| | || || |||| | || Sbjct 55519271 AGAGGCTGGTGTTCGATGGCAAACAGCTGGAGGATGGCTGCACCCTGTCCGACTGCTACA 55519212 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 |||| || | || || || |||| Sbjct 55519211 TCCAGAACCAGTCCACCTTGTATCT 55519187 >seq19 Length=145277780 Score = 132 bits (146), Expect = 1e-25 Identities = 165/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || ||| |||| || || || | || || |||||||| |||| Sbjct 136502060 AGGTCAAAATGC---AGATCTTCCTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGG 136502004 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| ||||| || || Sbjct 136502003 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCAT 136501946 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | || || Sbjct 136501945 CCC-CCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCT 136501887 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| ||| |||| || || || || ||||| || || Sbjct 136501886 CTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 136501845 >seq22 Length=147524369 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || | || || || ||||| || ||||| || || ||| Sbjct 136850959 CAGATCTTCGTGAAGACCCTGANGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 136851016 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 136851017 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTAACCAGC 136851076 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || |||||||| || ||||| | || || |||| || ||| Sbjct 136851077 AGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACA 136851136 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 136851137 TCCAGAAAGAGTCCACCTTGCACCTGGT 136851164 >seq25 Length=158037523 Score = 120 bits (132), Expect = 7e-22 Identities = 165/225 (73%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCA-CAGGAAAAACGATCACCCTCGAGGT 177970 || ||||||| | || |||||||| || || | ||| || | | |||||||| ||||| Sbjct 74175650 GTCAAAATGC---AGATCTTCGTGAAGACCCTGAACAGTAAGATC-ATCACCCTAGAGGT 74175705 Query 177971 GGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC 178028 ||| || ||| ||||||||||||| | ||| ||||| ||||| ||||| || ||| Sbjct 74175706 GGA--GCCCAGTGACACCATCGAGAATATGAAAGCCAAGATCCAGGATAAAGAGGGCATC 74175763 Query 178029 CCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG----AAGGAC 178084 | || |||||||| | || ||||| || | || ||||| |||||||| | | || Sbjct 74175764 GCCCCTGACCAGCAGAGGCTGATCTTTGCTGACAAGCAGCTAGAAGATGGCCGCAGGTAC 74175823 Query 178085 TCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | ||||| ||| |||| ||| | ||||| ||||| || || Sbjct 74175824 TCTCTCTGATTACAACATCCAGAAATAGTCAACCCTGCACCTGGT 74175868 Score = 111 bits (122), Expect = 4e-19 Identities = 160/222 (72%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| |||||| | || ||| |||| || || || || || || |||||||| ||| Sbjct 146223872 AGGTCCAAATGC---AGATCTTCATGAAGACCCTAACTGGCAAGACCATCACCCTAGAGA 146223816 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | |||||||||||||| || ||||| ||||| ||||| | || Sbjct 146223815 TGGA--GCCCAGTGAAACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGCCAT 146223758 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||| |||||||| | || ||||| || || || || || |||||||| | || || Sbjct 146223757 --CTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGCACCCT 146223700 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| ||| ||| ||||| || || ||||| || || Sbjct 146223699 CTCTGATTACAACAACCAGAAAGAGTCGACCCTGCACCTGGT 146223658 >seq14 Length=171410997 Score = 118 bits (130), Expect = 3e-21 Identities = 149/202 (74%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||| ||| || || || || || |||||||| ||| Sbjct 114264413 AGGTCAAAATGC---AAATCTTCAAGAAGACCCTGACCAACAAGACCATCACCCTACAGG 114264469 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA----G 178023 || |||| ||| |||||||||||||||| ||| |||| ||||| |||||| | Sbjct 114264470 TG--AAGCCCAGTGACACCATCGAGAACGTGAAAGCCGAGATCCAGGAAAAAGAAAGAGG 114264527 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 | ||||| || ||||||||| | || ||||| ||||| || ||||| |||||||| | | Sbjct 114264528 GCATCCCCCCTGACCAGCAAAGGCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCTGCA 114264587 Query 178084 CTCTTGCCGATTATAACGTCCA 178105 | || | ||||| ||| |||| Sbjct 114264588 CCCTCTCTGATTACAACATCCA 114264609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682433087428