Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq22 134 1e-26 seq4 132 4e-26 seq25 129 5e-25 seq14 123 2e-23 seq19 120 3e-22 seq8 86.0 6e-12 seq16 82.4 7e-11 >seq22 Length=147524369 Score = 134 bits (148), Expect = 1e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| ||| ||| ||||| ||||| |||||||| Sbjct 136851183 GCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 136851124 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||| ||||| ||||||||||| | ||| |||| | || Sbjct 136851123 CAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGG 136851064 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 136851063 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 136851004 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||| ||||| ||||||||||| Sbjct 136851003 CTCAAGAGTGATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATGTT 136850953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| || ||| |||||| |||| ||| ||||| || | || || | || Sbjct 124974678 AACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATCT 124974619 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 124974618 TCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 124974559 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || ||| Sbjct 124974558 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 124974499 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || |||||||| Sbjct 124974498 TTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq4 Length=117747451 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| ||| ||| ||||| ||||| || || || Sbjct 92566638 GCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGA 92566697 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| | | || || ||||| ||||||||||||||||| | ||| ||||| | || Sbjct 92566698 CAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGG 92566757 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 92566758 GAGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTAC 92566817 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| ||||| ||||||||||| Sbjct 92566818 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 92566868 Score = 131 bits (144), Expect = 2e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| || || ||||||||||| | || || Sbjct 57378931 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 57378872 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | ||| | || ||| || ||| | Sbjct 57378871 AGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGG 57378812 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || |||| ||| | | ||||| || | ||||||||| | || || || || Sbjct 57378811 ATCTTGGCCTTC-ACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTT 57378753 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 57378752 GCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 57378720 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| || ||| |||| ||| ||| ||||| ||||| |||||||| Sbjct 57051158 GCCACCGCGCAGACGCGGCATCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 57051217 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||| ||||| || |||||||| | ||| ||||| | || Sbjct 57051218 CAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGG 57051277 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 57051278 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 57051337 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||||||||| ||||||||||| Sbjct 57051338 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTTACGAAGATCTGCATGTT 57051388 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| | || ||| | ||||| ||||| ||||| || Sbjct 55387561 GCCGCCACGCAGACGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGA 55387620 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||| ||||| ||||||| ||| | ||| ||||| | || Sbjct 55387621 AAGGGTGCGTCCATCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGG 55387680 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || ||||| ||| || ||| | | | ||||| || | |||||| Sbjct 55387681 GATGCCTTCTTTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCAC 55387740 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || ||||| ||||| ||||| ||||||||||| Sbjct 55387741 CTCAAAAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATGTT 55387791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | | |||||| || ||| || ||||| |||| ||||||| ||||||| Sbjct 55519175 AGACGCAGCTCCAGATACAAGGTGGACTGGTTCTGGATGTAGCAGTCGGACAGGGTGCAG 55519234 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| |||| | ||| | ||||||||| || | || || Sbjct 55519235 CCATCCTCCAGCTGTTTGCCATCGAACACCAGCCTCTGTTGGTCAAGTGGGATGCCTTCA 55519294 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||| ||| || | ||| | | | ||||| || | || ||||| | || Sbjct 55519295 CTGTCTTGGATCTTGTCCTTGACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTG 55519354 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||||| ||||| ||||| ||||||||||| Sbjct 55519355 ATGGTCTTGTCCGTCAGGGTCTTCACGAAGATCTGCATGTT 55519395 >seq25 Length=158037523 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || ||||| ||||| Sbjct 45424436 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 45424495 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || ||| Sbjct 45424496 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 45424555 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| || | ||||| || | ||||||||||| || Sbjct 45424556 TTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 45424615 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 45424616 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 45424654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| || || ||||||||||| | || || Sbjct 45424673 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 45424732 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||| || ||| | Sbjct 45424733 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 45424792 Query 41774 ATTTTTTGCTTCA 41786 || || ||||| Sbjct 45424793 ATCTTGGCCTTCA 45424805 >seq14 Length=171410997 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || ||||| ||||| Sbjct 144150357 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 144150416 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || ||| Sbjct 144150417 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 144150476 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || |||| ||| | | ||||| || | ||||||||| | || Sbjct 144150477 TTATCCTGGATCTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGT 144150535 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| |||||||| || Sbjct 144150536 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 144150577 >seq19 Length=145277780 Score = 120 bits (132), Expect = 3e-22 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||| || || ||||||||||| Sbjct 136501836 AGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGG 136501895 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || ||| Sbjct 136501896 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG-GGGGATGCCCTCT 136501954 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 136501955 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 136502014 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || | ||||| ||||| | ||| |||||||| || Sbjct 136502015 ATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCATTTT 136502055 >seq8 Length=97450195 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| || ||| |||||| |||||||| ||||| || | || || | || Sbjct 30032863 AACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 30032922 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 30032923 TCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 30032982 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || ||| Sbjct 30032983 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 30033042 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || |||||||| Sbjct 30033043 TTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq16 Length=152576986 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| ||||| || |||||||| Sbjct 6231837 AGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 6231778 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || ||||||||||| || || || |||| ||| ||||| | ||| Sbjct 6231777 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGGCTCTGCTGGTCAGGGGG 6231728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285727434400