Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq30 91.5 3e-13 seq8 91.5 3e-13 seq165 89.7 1e-12 seq34 89.7 1e-12 seq28 89.7 1e-12 seq25 84.2 5e-11 >seq30 Length=120421639 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 23436339 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 23436398 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 23436399 CCCCACGTTGGGC 23436411 >seq8 Length=160039680 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 96428234 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 96428293 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 96428294 CCCCACGTTGGGC 96428306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 96499584 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 96499525 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 96499524 CCCACGTTGGGC 96499513 >seq165 Length=247497 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 213467 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 213526 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 213527 CCCACGTTGGGC 213538 >seq34 Length=94987271 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 23533962 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23534021 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23534022 CCCACGTTGGGC 23534033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 23535404 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23535345 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23535344 CCCACGTTGGGC 23535333 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 23547360 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23547419 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23547420 CCCACGTTGGGC 23547431 >seq28 Length=122082543 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 48833955 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 48833896 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48833895 CCCACGTTGGGC 48833884 >seq25 Length=129401213 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 || || |||||| |||||| ||||||||||| || ||||| || || | || | || Sbjct 112938383 CAGGCCTCAACAAGTGAACTTTATGGAAAAGTGCAGGAAATACCCCAGAAGGAGACCACA 112938324 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || ||||| | || ||||| | || ||||| || || || |||||| Sbjct 112938323 CCTTTCTATCCGAGGTCACCCTATGGAGCAGCCAAACTCTATGCCTATTGGATTGTGGTG 112938264 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAGAG 61267 |||| ||| || | ||| | |||| | || | | || || | |||||||| ||||| Sbjct 112938263 AATTTCCGTGAAGCTTATAATCTCTTTGCA-GTGAATGGAATTCTCTTCAATCATGAGAG 112938205 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTA 61305 ||||| ||||| | | ||||| ||||| ||||||| Sbjct 112938204 TCCCAGAAGAGGAGCTAATTTTGTTACTCGAAAAATTA 112938167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821194452410