Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq30 188 7e-43 seq23 174 2e-38 seq9 163 3e-35 seq29 93.3 4e-14 >seq30 Length=120421639 Score = 188 bits (208), Expect = 7e-43 Identities = 554/846 (65%), Gaps = 31/846 (4%) Strand=Plus/Minus Query 16687 AACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAA 16746 ||| ||||| || || || || ||||| || |||| || || |||||||| |||||||| Sbjct 3353919 AACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCCATAAAATCAAA 3353860 Query 16747 AGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 ||||| || |||||| || || ||| | || ||||| | | |||||| || |||| Sbjct 3353859 GGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTACAAGTAATCTGTCAGCTA 3353801 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 |||| || || || || | | || | ||||||||||| || || | || || | | Sbjct 3353800 CAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCCAACAGGCAAGG 3353741 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTT 16925 |||| || ||||| ||||| || ||| || || ||| || |||| | Sbjct 3353740 CTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTCCCTCACTCTGT 3353681 Query 16926 CCTCGGACGG--TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAA 16983 | || || || |||| | ||||||||| || || || || || || | Sbjct 3353680 CTTCTGAAGGCTTGTA-----------CTGAAACATCAGGCAGGCAAAGTCACAGTGAAG 3353632 Query 16984 TCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTT 17043 || || || |||||||| ||||| || ||||| |||| || ||||| |||| || Sbjct 3353631 ACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTT 3353572 Query 17044 CTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAA 17103 ||||| ||| ||||| || || || || ||||| ||| | || || || || | ||||| Sbjct 3353571 CTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCACAGCAGCAAA 3353512 Query 17104 CGCGATTAATCGTTCGGC----GTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCC 17159 || | | || ||| | ||| | | | | || | ||||| | | || Sbjct 3353511 GGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCT----ATCCAGCGCAGAGCCT 3353456 Query 17160 ACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT--AATTTCTCTTT 17217 | || ||||||| ||| | | ||| ||||| || || |||||| || ||| |||| Sbjct 3353455 AGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTCCCTTT 3353396 Query 17218 TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 | || | | || | || || || || || |||| |||||||| || ||||| | || Sbjct 3353395 T--CTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATT 3353338 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC--ACG 17335 ||| ||| |||||||| || || ||||| | | |||| | || || ||| || Sbjct 3353337 CTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGGACCTCCTGAC- 3353279 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 || || || ||| | | ||||| || || || || || || || || ||||| || || Sbjct 3353278 TA-AAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 3353220 Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTG 17455 || || || ||||| || ||||| | | |||| | ||||| | | || Sbjct 3353219 ATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTTCTTT 3353160 Query 17456 GATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAA 17515 || | || || ||||| ||||| ||| ||| ||| | |||||||| |||| Sbjct 3353159 GACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATTCTCCAG 3353100 Query 17516 ATATCA 17521 |||||| Sbjct 3353099 ATATCA 3353094 Score = 143 bits (158), Expect = 3e-29 Identities = 209/293 (71%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 16927 CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986 ||| ||||| | ||| || || || |||||||| || || || || || ||||| || Sbjct 12680245 CTCCGACGGCTTGTGTGCCAGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACC 12680186 Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046 |||||||||||| ||||| || || |||||||| | || |||||| ||| |||||||| Sbjct 12680185 CTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTT 12680126 Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 | ||| ||||| | || || || || |||||||| || || || |||| ||||| || Sbjct 12680125 GAGCCACAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 12680066 Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 | | || ||| | |||| || ||||||| | |||||| | |||| || || Sbjct 12680065 CACAACTCTTTCTCCATACGCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGC 12680006 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA-AT-TTCTCTTT 17217 || | ||| | ||| ||| ||||| || || || || | || |||||||| Sbjct 12680005 CTTCTTCTTCACACAAGGCATAGTTTCAATAGCATTGAAGAGATATTCTCTTT 12679953 >seq23 Length=145441459 Score = 174 bits (192), Expect = 2e-38 Identities = 397/600 (66%), Gaps = 12/600 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| || || | || || ||||| |||| ||||||||| ||||| Sbjct 104692630 AGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGC 104692689 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||| ||| | || |||||| || || ||||| | ||| ||||||| || Sbjct 104692690 TCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC- 104692748 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 |||||| | || || || ||||| || | | || ||| | || Sbjct 104692749 -----------AAAGAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATAT 104692797 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 | | ||||||| | | |||| | |||| || || || | ||| | ||| | Sbjct 104692798 GGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 17186 ATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCG 17245 || |||| || || || || | | ||| |||||| || | || || || || Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 17246 ATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAG 17305 || || | ||||||||||| ||||||||||| |||||||| || | || || || || Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 17306 CATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACG 17365 || ||||| || | | ||||||||| | ||||| ||| | | ||||| || || Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 17366 ATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT 17425 ||||| || ||||| | || || |||| | || || |||||| | || ||| || Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 17426 GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 | ||| | ||||| | | | | ||||| | ||||| || | || |||||||| Sbjct 104693098 TTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAAAG 104693157 Query 17486 CTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545 ||| | || || || ||||| | ||| ||||||| ||||| ||||| || |||||| Sbjct 104693158 GAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAACA 104693217 >seq9 Length=156508116 Score = 163 bits (180), Expect = 3e-35 Identities = 398/599 (66%), Gaps = 12/599 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| | | || || || ||||| |||||||||||||| ||||| Sbjct 73422475 AGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 73422534 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | || |||| | ||| ||||||| | ||| ||||||| || Sbjct 73422535 TCATTGGAAAATGTAAGGCCCGGCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCA 73422594 Query 17066 AACGACCCAG-AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || || |||| ||||||| || || || | ||||| || | | |||||| || | Sbjct 73422595 AAAGAACCAGAAAAAGAAGATTGGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATG 73422654 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA-AT 17183 || || ||||||| | | |||| | | |||| || || || | || | Sbjct 73422655 TGTAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT--------CACAG 73422706 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTAT 17243 ||| ||||| || || || || | | |||||||| | | || | || || || | Sbjct 73422707 GCATTGTTTCAATAGCATTGAAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGT 73422766 Query 17244 CGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAA 17303 | || || || |||||||||| ||||||||| ||| || | | || || || |||| Sbjct 73422767 CAATAAGGAGACTGTACATTTTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATAAA 73422826 Query 17304 AGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCA 17363 | || | || || | | ||||||||| | ||||| ||| | | ||| | || | Sbjct 73422827 A-CAGCCAGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGA 73422885 Query 17364 CGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCG 17423 ||||| || ||| | | || || |||| | || || |||| | | || || | Sbjct 73422886 GTATGCCATCACTCCCTACAAAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGG 73422945 Query 17424 GTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAA 17483 || | ||| | ||||| | | | || ||||| | ||||| || || | ||||||| Sbjct 73422946 GTTTCAGAGCTTCCCAGTGC-TGATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAA 73423004 Query 17484 AACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACA 17542 | | ||| | || || || ||||| | ||| ||||||| ||| | ||||| || ||| Sbjct 73423005 AGGTGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGACA 73423063 >seq29 Length=120129022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| ||||| || || |||||||| | || |||||| || ||||||| Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || |||| ||||| | Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 17106 C 17106 | Sbjct 24711683 C 24711683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544260850760