Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq30 333 3e-86 seq23 185 9e-42 seq9 176 5e-39 seq32 98.7 1e-15 seq29 89.7 5e-13 >seq30 Length=120421639 Score = 333 bits (368), Expect = 3e-86 Identities = 609/880 (69%), Gaps = 23/880 (3%) Strand=Plus/Minus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| || || ||| ||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 3353934 TCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTT 3353875 Query 15970 TTCCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 |||||||||||||||||||| || |||||| ||||| ||| | || ||||| || Sbjct 3353874 CTCCATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTACAA 3353816 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 |||||| || |||||||| || || || || | | || | || || ||||| || | Sbjct 3353815 GTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGA 3353756 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || || | |||| ||||||||| | || || || ||| || || ||||| Sbjct 3353755 GGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGA 3353696 Query 16149 TATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | || | ||| ||| ||| || || | || | |||||| || || || Sbjct 3353695 TTTCCCTCACTC-TGTCTTCTGAAGGCTT---------GTACTGAAACATCAGGCAGGCA 3353646 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| || || || ||||| || |||||||| ||||| || |||||||| | || ||| Sbjct 3353645 AAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGC 3353586 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || |||| ||||||| ||||||||| ||||||||||| || || ||| | || || Sbjct 3353585 ATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCT 3353526 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || |||| ||||| || | | || |||| | | |||| | ||| ||||| Sbjct 3353525 TCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAG 3353466 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447 | | || | || ||||||| || | | | ||| ||||| || || ||||| || Sbjct 3353465 CGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAA 3353406 Query 16448 --TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 ||| ||||| || || || | || || || || || |||||||||||||| |||| Sbjct 3353405 AATTCCCTTTTCTTTGGATCTC--TGATGTAAGTGTCTATTAGTAAACTGTACATCTCTG 3353348 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 |||| | ||||| ||| |||||||| ||||||||||| ||| ||||| | || | Sbjct 3353347 AGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGGA 3353288 Query 16566 CTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 | ||| || ||||| || ||| ||| ||| ||||| || || || ||||| || ||||| Sbjct 3353287 CCTCCTGAC-TAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAA 3353230 Query 16624 AAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTT 16683 ||| || || ||||| || ||||| || ||||| ||| |||| | | ||| | Sbjct 3353229 AAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGG 3353170 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGCCTTTTTAT 16742 | | || || | || || |||||| ||||| |||| | ||| ||| | |||| Sbjct 3353169 GAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGAT-GCCCGTGCTTGCTTAT 3353111 Query 16743 ACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||| |||||| || || || ||||| | ||| Sbjct 3353110 ACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGAC 3353071 Score = 131 bits (144), Expect = 2e-25 Identities = 195/274 (71%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || |||| || ||||||||||| ||||| Sbjct 12680226 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 12680167 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| ||| |||||||| | ||| ||||| | ||| Sbjct 12680166 TCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCA 12680107 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || || | ||||| || | | || ||| | ||| Sbjct 12680106 AAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATAC 12680047 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 | ||| ||||| | | |||||| | |||| || || || | || | |||| | Sbjct 12680046 GCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 12679987 Query 16424 ATCGTTTCTATGGCCTTAAACA-AT-TTCTCTTT 16455 || ||||| || || || || | || |||||||| Sbjct 12679986 ATAGTTTCAATAGCATTGAAGAGATATTCTCTTT 12679953 >seq23 Length=145441459 Score = 185 bits (204), Expect = 9e-42 Identities = 402/600 (67%), Gaps = 14/600 (2%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || |||| || |||| || | ||||||||| ||||| Sbjct 104692630 AGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGC 104692689 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||||| || | || ||||| || || ||||| | ||||||||||| ||| Sbjct 104692690 TCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCA 104692749 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || |||| | || | |||| |||| || | | || ||| | || Sbjct 104692750 AAG---------AAGACTCCTTCCACCACAG---CAAAGGCCACAACTCATTCTCCATAT 104692797 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 | | ||||| | | | |||| | |||| || || || | || | |||| | Sbjct 104692798 GGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 || |||| || || || || | | ||| |||||| ||| | || || || ||| Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 || || |||||||||||| ||||||||||| || ||||| || | || |||||||| Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || ||||| | | ||| ||||| | |||||| ||| ||| ||| ||||| || Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663 || || ||||| || |||| || |||| | ||| || |||||| | || || | Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC-GTCCAAAA 16722 | ||| | ||| | || | | | ||||| | ||||| || | |||| |||||||| Sbjct 104693098 TTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCT-TGGCAGTCCAAAA 104693156 Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | ||| | || || || ||||| | ||| ||||||| ||||| |||||||| || || Sbjct 104693157 GGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAAC 104693216 >seq9 Length=156508116 Score = 176 bits (194), Expect = 5e-39 Identities = 400/597 (67%), Gaps = 10/597 (2%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || | | ||||| || |||| || ||||||||||| ||||| Sbjct 73422475 AGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 73422534 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || |||| ||| ||||||| | ||||||||||| ||| Sbjct 73422535 TCATTGGAAAATGTAAGGCCCGGCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCA 73422594 Query 16304 AATGACCCCG-AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362 || || || | ||||||| || || || | ||||| || | | |||||| || | Sbjct 73422595 AAAGAACCAGAAAAAGAAGATTGGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATG 73422654 Query 16363 CGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 ||||| ||||| | | | |||| | | |||| || || || | || | Sbjct 73422655 TGTAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CAC-AGG 73422707 Query 16423 CATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATC 16482 ||| ||||| || || || || | | |||||||| | ||| | || || || || Sbjct 73422708 CATTGTTTCAATAGCATTGAAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTC 73422767 Query 16483 AATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542 ||| || | ||||||||||| ||||||||| || || | | || || ||||| || Sbjct 73422768 AATAAGGAGACTGTACATTTTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATA-AA 73422826 Query 16543 GCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCAC 16602 || | |||||| | | ||| ||||| | |||||| ||| ||| ||| |||| | Sbjct 73422827 ACAGCCAGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAG 73422886 Query 16603 GATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGA 16662 || || ||||| | |||| || |||| | ||| || |||| | | || || | Sbjct 73422887 TATGCCATCACTCCCTACAAAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGG 73422946 Query 16663 TGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | | ||| | ||| | | | || ||||| | ||||| || || | |||||||| Sbjct 73422947 TTTCAGAGCTTCCCAGT-GCTGATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAA 73423005 Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 | | ||| | || || || ||||| | ||| ||||||| ||| | |||||||| || Sbjct 73423006 GGTGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 73423062 >seq32 Length=104043685 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| ||||| || |||||||| | || ||||| |||| |||| Sbjct 37937215 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 37937274 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| ||||||||||| || || ||||| || || || |||| ||||| | Sbjct 37937275 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 37937334 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 37937335 CCACCACTCTTTCC 37937348 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || || |||||||||||||| |||||||| | ||||| ||| |||||| Sbjct 37945057 ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAGAATCTGA 37945116 Query 16532 AATCCATAGAAGCATCGAGCCTC 16554 || ||||||||||| |||||||| Sbjct 37945117 AAGCCATAGAAGCAGCGAGCCTC 37945139 >seq29 Length=120129022 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| ||||| || |||||||| || | || ||||| || |||||||| Sbjct 24711801 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 24711742 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 24711741 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 24711683 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | |||||||||||| ||||||||||| || ||||| || || Sbjct 24710472 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGG 24710413 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || || ||||| | | ||| ||||| | |||||| ||| || Sbjct 24710412 AAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACC 24710356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413076715240