Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq27 230 2e-55 seq16 100 2e-16 >seq27 Length=130694993 Score = 230 bits (254), Expect = 2e-55 Identities = 523/783 (67%), Gaps = 29/783 (4%) Strand=Plus/Plus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTAC-AAAGCG 18637 || || ||||| || |||| || || || ||||||||||||| | || || |||| | Sbjct 87966994 TTCGGCATGCAGGCACGATCCAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAAGAG 87967053 Query 18638 TGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTC 18697 |||| | ||| || || |||| |||||||| ||||||||| || || || || | Sbjct 87967054 TGTTCT--GGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGC 87967111 Query 18698 CAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCT 18757 |||||| | || | || | | || |||||| | |||| | | ||||| Sbjct 87967112 TAAAGAATTGTCCTCCAAGGGAGTGAGAATCTGGGATGCTAATAGATCCCGAGACTTTCT 87967171 Query 18758 AAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCA 18817 | || || || | |||| |||||||| ||||| |||| || ||||| Sbjct 87967172 GGACAGCTTGGGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCA 87967231 Query 18818 GTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAAT 18877 ||||| ||||||||||| || || |||||| | ||| | || | | |||||| | Sbjct 87967232 ATGGAGGCATTTTGGAGCAGAGTACAAAGACATGGATTCAGATTACTCAGGACAAGGAGT 87967291 Query 18878 CGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGAT 18937 || |||||||||| || || || || || ||||| ||||| || | || || || Sbjct 87967292 AGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGA---AT 87967348 Query 18938 TATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTA----CTACCTCCATGTCACA 18993 || | | ||||| ||||| ||| | ||| | |||| | || ||||| || || Sbjct 87967349 CATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTGCCTCCTTGCCATG 87967408 Query 18994 CGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGG 19053 | | |||||||| || | | || || || |||| ||||| | |||||||| || | Sbjct 87967409 CCCTCTGTCAGTTCTATATGGTGAATGGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAG 87967468 Query 19054 GGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAG 19113 | |||||||| || || || || ||||||||||| | |||| || || |||||||| Sbjct 87967469 GAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCAGCTATGTTCTGCTCACCTACATGA 87967528 Query 19114 TAGCGCATGTTACAGGAC----------TTAAAACCGGAGATTTAATTCATACAATGGGG 19163 | || ||| | ||||| | || | | || ||||| | || | |||| Sbjct 87967529 TTGCACATATCACAGGCCTGCAGACATTTTTAGCCAGGTGATTTTGTCCACAATTTGGGA 87967588 Query 19164 GATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCA 19223 ||||||||||||||| ||||||||||||| | | ||| | |||||| | | Sbjct 87967589 GATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCAGCTA-------CAGCG 87967641 Query 19224 AAACCTTTTCCTTGCCTTAAAATTATTCG-AAATGTAACAGATATAAACGACTTTAAATG 19282 | |||||| || || ||||| |||| ||| || | | | || | || || ||| Sbjct 87967642 AGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGGTGAGACA-ATCGATGATTTCAAAGT 87967700 Query 19283 GGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCT 19342 || || |||||| |||| || ||||||||||| || | | |||||||| || ||| | Sbjct 87967701 TGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAAAATGGAGATAGCTGT 87967760 Query 19343 TTA 19345 ||| Sbjct 87967761 TTA 87967763 >seq16 Length=151834684 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | |||||||| || || | || Sbjct 30063412 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 30063353 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || ||| | || ||||| | |||||||| || || |||||||| || || || || ||| Sbjct 30063352 GGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTC 30063293 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 |||||||| | ||||| || || |||||||| | || ||| | ||||| || Sbjct 30063292 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGCCT 30063240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502992126315