Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq27 199 3e-46 seq26 132 3e-26 seq1 131 1e-25 seq30 116 3e-21 >seq27 Length=130694993 Score = 199 bits (220), Expect = 3e-46 Identities = 577/879 (66%), Gaps = 33/879 (4%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 |||||||| || | ||||||||| | || ||||| ||||| ||| ||| | || ||| Sbjct 87967763 TAAACAGCTATCTCCATTTTAATCGTTGGATGTGGATTATACCCTTC-AATCTGAAAGTC 87967705 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || |||| || ||||| || | | |||| | | | | || |||| || || Sbjct 87967704 TTCAACTTTGAAATCATCGATTGTCTCACCTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 87967645 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| | || | ||| ||||| || | || || |||| | || || || || Sbjct 87967644 TCTCGCTGT-------AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGC 87967592 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTA----------GTGACATGAG 101762 |||||| | | | |||| ||| || || ||| | || |||| ||| | Sbjct 87967591 ATCTCCCAAATTGTGGACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTG 87967532 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 |||||||| | || | ||| |||||| |||||||| || ||||| || | ||||||| Sbjct 87967531 CAATCATGTAGGTGAGCAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATAT 87967472 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTT 101881 | |||| || || || || || || || |||| |||| ||| | ||| || |||| Sbjct 87967471 CTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC-ATATAGAACTGACAG 87967413 Query 101882 AATACATGACAAGGCGGCAA-CA---CCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 | |||| ||||| |||| || |||| |||| ||| ||||| ||||| Sbjct 87967412 AGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACA 87967353 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTG 101997 ||| | | ||||| || |||||| ||||| || || ||||||| | || | || Sbjct 87967352 CATGA---TTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTG 87967296 Query 101998 GTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCT 102057 ||| ||||||| |||| ||||| | | |||| || |||||||| |||||||| Sbjct 87967295 GTCTACTCCTTGTCCTGAGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCT 87967236 Query 102058 CCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTT 102117 ||| || || ||||| || || || || || ||||| | || | || |||| || | | Sbjct 87967235 CCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCT 87967176 Query 102118 ATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTC 102177 || | ||| || |||| ||| |||||||| || ||| || | || | || Sbjct 87967175 GTCCAGAAAGTCTCGGGATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTC 87967116 Query 102178 TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAA 102237 ||| | || ||||| ||||||||||||||| || || | |||||| |||| || Sbjct 87967115 TTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAA 87967056 Query 102238 TACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAACCTAGACTGTGTTCC 102297 ||||| || || || | || |||||||||| | | || | | | ||| | || Sbjct 87967055 CACTCT-TTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGGATCGTGCCTGCATGCC 87966997 Query 102298 AAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCAT--TTTTAAATGACCCATAATTTAAA 102355 || | ||| || ||||| || | | ||| | || | | | | || | ||| Sbjct 87966996 GAACACCTACAGGGTGCCAGTGCCCATGCGGTCCTCCTTCTTGAAGCCGCAGCA--CAAA 87966939 Query 102356 ATGTGCTGTACCTGTGAGAGGTACTGGTGTTCTCCATGC 102394 ||||||| ||||| ||||||||| ||||||||||| Sbjct 87966938 ATGTGCTCCACCTGCCTCAGGTACTGGAGTTCTCCATGC 87966900 >seq26 Length=124595110 Score = 132 bits (146), Expect = 3e-26 Identities = 285/422 (68%), Gaps = 8/422 (2%) Strand=Plus/Plus Query 3976 TTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 ||||| | ||| ||||||||||| |||| || | || || | || || | | | || Sbjct 31567733 TTCTTTTTATAGACTTCAAATTTATACTCAAGGCCCTTTTCCTTTTAGACCTCAAAGAGG 31567792 Query 4036 ACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGG-- 4093 ||| ||| ||| | | | |||| ||| || | | || || |||||| || Sbjct 31567793 TCACCTGGGTATCGTGGGAGAGGTTTATATCTCCCAAAATAAATTTCTGGGGGGTGGGGG 31567852 Query 4094 TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAAC 4153 ||| || |||| | || || |||||| | | ||||| | | || | | || | | Sbjct 31567853 TGTTACTTTCAGATTCCTGTATGATCTT-GCCACAATCTG----AGGTGACCGGGCTGAT 31567907 Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 |||| || | || || ||||||| ||||| | | ||| |||| ||||| ||||| || Sbjct 31567908 TCATCACTCCCTTGTAAACAGAACCACCTCGCACTGCCCAAACCACGTCTAATTTATCTG 31567967 Query 4214 CTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAG 4273 |||||||||| | ||| || ||| |||| ||| |||| ||| || || | |||| ||| Sbjct 31567968 CTAATTCTGGTTTTTCAGTGAGTCTTAAGACATTGTCTAGACTTTTGGCAAGAAAACGAG 31568027 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAG 4333 ||| ||||| | |||| ||||| | | |||||| | |||||||| | || |||| Sbjct 31568028 CTCCTTGTGGTGGTTCCTCGAGTTCTCTACAGAGAACTATGTTAATTCTTTCCTTCAAAG 31568087 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 |||||||| |||| |||| || || ||| |||| |||||| | | |||| Sbjct 31568088 CTTCAGTCTTCTCAAGAATGGAGAGCC-AGGCTTCCCACCCCAAATCACCAGGTCATGTT 31568146 Query 4394 TA 4395 || Sbjct 31568147 TA 31568148 >seq1 Length=195471971 Score = 131 bits (144), Expect = 1e-25 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 26935 TTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCT 26994 ||||| || | | | | ||||| | | ||||| |||||||| ||| ||| ||||||| Sbjct 20733860 TTTAGGCTGCCTGGCGGACAATCGAGGCCACGCAGGTGCAGCCCACACCCACCAGCATCT 20733801 Query 26995 TCTCTAGCCTAAA--TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTC 27052 |||| | ||| || |||| |||||| | | || | | || || || ||||| Sbjct 20733800 TCTCGACCCTGAAAGTGAAG--GGGCAGCTCTCAGGCTCCCTCTTCAGGACCAGGATCTC 20733743 Query 27053 TTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCC 27112 ||| ||||| | || || |||||||||| ||| | || || || ||||| ||||| | Sbjct 20733742 TTGCTGGATGAGAACAGAATTCATGTGGTGGTCCAGCTTTCCCTCCGCATTGACACAGCG 20733683 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| |||||||| |||||||||||||||||||| | ||||||||||| Sbjct 20733682 CTGGTGGCGGCACTGAGCTTCCCAGATCACAGAGGGATATCTATCAGGGTCTTCATTGCG 20733623 >seq30 Length=120421639 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 92358033 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 92357974 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 92357973 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 92357925 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 || |||||||| ||||| | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 92365787 TAAACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTACTTGCCAATTCCGGTTGT 92365728 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 || ||||| |||| |||||||| ||||| || || | ||||||||||| Sbjct 92365727 TCAATAAGTCTTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTC 92365679 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 92368292 AAGTTTATATTTCCCCAAATCAATTTCTGGGAAAAACGTGTCACTTTCAAATTCCTGCAT 92368233 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | || | || ||| | | |||| ||||| || | ||| | Sbjct 92368232 GATCCTTGTCACAAAGAGTCTGAGGTGGCCTGGTTGATTCATGGCTTCCTTTAAAACAAA 92368173 Query 4176 AC 4177 || Sbjct 92368172 AC 92368171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250288630957