Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq26 221 1e-52 seq23 159 4e-34 seq27 114 2e-20 >seq26 Length=124595110 Score = 221 bits (244), Expect = 1e-52 Identities = 256/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| ||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 108340119 GCTGGGACAGCAGGGTTTCTATGTCAGGTTCGATGTCGATGGTACGAAAGCGGCGGCTGT 108340060 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 ||||||||||||| ||||| | ||||||| ||||||||| ||||||||||| | || Sbjct 108340059 ACCTGCGCACGGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATGT 108340000 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || ||||||| ||| ||||| | || Sbjct 108339999 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTCATGAGCGCAGTGGGGT 108339940 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || || | |||| ||| | || ||||||| |||||||| || ||| | ||| Sbjct 108339939 CGTCACTGGGTGTTGGCAAGGCATTCCGCAGGAAGGTAAAGAGCGGGTGAGCCTTCTCAC 108339880 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | || || ||||||||||| || | |||| || |||||||| ||| ||||| |||| Sbjct 108339879 CATTCACTTCGCACTTCTCAAACAATGTAAAATTGGGCTCGAACCCGCCACCAGGTCGGA 108339820 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| ||| |||||| || ||||| |||||| | | || |||| Sbjct 108339819 CGTACTTGAGGGAATTCAGAATCTCTTCATTCTTGCCATTCTCCT 108339775 >seq23 Length=145441459 Score = 159 bits (176), Expect = 4e-34 Identities = 323/475 (68%), Gaps = 6/475 (1%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||||||| ||| | ||||||| | || | |||| || Sbjct 100265219 GATGTCAGGCTCGATGTTGATGGTCTGGAAGCTGCGGCTGTAGCGACGGAAGGGCTCCCC 100265160 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||| |||||| ||||| ||| ||| Sbjct 100265159 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGACACGTCTGAGCGGCGCACAGGACT 100265100 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | | |||||| ||| ||||| Sbjct 100265099 CCATATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCGTCATAAGGGTAGGGCAG 100265040 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| || ||||| || ||||| | Sbjct 100265039 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTCGTTCTGC-CCATTGACGTCACACTTTT 100264981 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || ||||| | |||| | | || || ||| ||||| | ||| ||| || Sbjct 100264980 GGGTAAGACTAAAGGTGGGCTGGTACCCAC-CCTAGGGCGGACATACTTGAGGCTGTTCA 100264922 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCA 83426 |||||| ||||||| ||| ||||| || ||||||||||| || ||||| || || | Sbjct 100264921 GGATCTCCTCATTCTGACAGTTCTCCTGATGTCCGAACTGGTTGCAAGGGAAGCCGAGAA 100264862 Query 83427 CTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGA 83486 ||||||| | || | | ||| | | |||||| || | ||| |||| |||||| Sbjct 100264861 CTACCAGGCGCCTGG---GAAAGCGACATTTCAGCTCATTGAGCTGTTTGTAGTCCCGGG 100264805 Query 83487 CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 || | |||||||| ||||| || ||||| || |||| ||| ||| || || Sbjct 100264804 TAGTTGTTCCTCAGAGTGACGCCACATTCTCAATCAGCACAGCCCTGCCTCGGAA 100264750 >seq27 Length=130694993 Score = 114 bits (126), Expect = 2e-20 Identities = 189/265 (71%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| || ||||||||| || ||| Sbjct 43511277 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 43511335 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 43511336 TCGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 43511395 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || ||| ||| | | || |||| ||||| Sbjct 43511396 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGGCCCGCATCAGGCTGATCCGCCACTAC 43511454 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCT-GGC 50646 |||||| | || ||||| || ||||| |||||||||| | ||||| | ||| Sbjct 43511455 GTGCAGCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCCTGGAGTTCGTAGGC 43511514 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGC 50671 || ||||||||||||| |||||| Sbjct 43511515 AAGC-TGGACGAGCGCTGTCGGCGC 43511538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608795224738280