Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq27 192 4e-44 >seq27 Length=130694993 Score = 192 bits (212), Expect = 4e-44 Identities = 428/634 (68%), Gaps = 24/634 (4%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 || || ||||||| ||||| || |||||||| ||| |||| | ||| || || || Sbjct 87967617 TCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGGACAAAATCACCTGGCTAA 87967558 Query 97111 AAAT----------CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAAT 97160 |||| | |||| ||| || ||||| | || | ||| |||||| ||||| Sbjct 87967557 AAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCTGGCAAT 87967498 Query 97161 GTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTT 97220 ||| || ||||| || || |||||||| |||| || || || | ||| || || |||| Sbjct 87967497 GTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTC 87967438 Query 97221 TCCAT-CACACACATAAAACTGACTCAATACATGACAGGGGGGCAAC----GCCATTTTT 97275 |||| ||| || ||| ||||||| | |||| || || |||| ||||| Sbjct 87967437 CCCATTCAC-CATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGG 87967379 Query 97276 GGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT 97335 |||| |||| ||||| |||||||| | ||||||| || ||||| || | Sbjct 87967378 GGAAGATCTTTTGGGTTCCAGGCACACATGA---TTCTTCTGTCATCAGGGTTGGTTTTG 87967322 Query 97336 ATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAG 97394 ||||| | ||| | | | | || || || |||| ||| |||| || | | Sbjct 87967321 ATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAATCCATG 87967262 Query 97395 ACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 | ||| || |||||||||||||||||||||||||| |||||||| || || ||||| || Sbjct 87967261 TCTTTG-TACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCC 87967203 Query 97455 TTCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCC 97513 ||| | || || | || |||||| | || | | || | |||| ||| ||||||| Sbjct 87967202 TTCCTGTCGGGCAGAAAATCCCAAGC-TGTCCAGAAAGTCTCGGGATCTATTAGCATCCC 87967144 Query 97514 AAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | || ||| || | | | ||||| | || ||||| |||||||||||| Sbjct 87967143 AGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACA 87967084 Query 97574 ACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCT 97633 |||| || |||| |||||| |||| || ||||| || ||||| | |||||||| || | Sbjct 87967083 ACAACTCCTCCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGAGCAGAGGAAATTCAT 87967025 Query 97634 TTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 | | |||| ||| | |||||| || || || Sbjct 87967024 CTCTCAGGCTGGATCGTGCCTGCATGCCGAACAC 87966991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783125128990