Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30 385 4e-102 seq9 187 2e-42 seq23 167 2e-36 seq32 104 2e-17 seq29 98.7 9e-16 >seq30 Length=120421639 Score = 385 bits (426), Expect = 4e-102 Identities = 638/912 (70%), Gaps = 17/912 (2%) Strand=Plus/Minus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||| ||||| ||| | | || |||||||| | | | | ||| |||| | | Sbjct 3353993 CTTTAGAAATCTGCATCCAAGGTGAAGACATTATCGGTGGTTTCCGCCATGACTGCAAAT 3353934 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 | ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct 3353933 CTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTC 3353874 Query 16004 TCCATAAAATCAAAAGGATTTTTTG-AACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||||||||| ||||||| || || | | ||| | |||| | ||| | | Sbjct 3353873 TCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTT-GAGAATCCAAGTTCTACAAG 3353815 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || || ||||| || || ||||||||| | ||| ||||||||||||| || | Sbjct 3353814 TAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAG 3353755 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 |||||| | |||||||||||||| | | || || | ||| || ||| || || Sbjct 3353754 GCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGAT 3353695 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 || || ||| || | | | ||| || || | |||||| | || ||||| Sbjct 3353694 TTCCCTCACT---CTGTCTTCTGAAGGCTT------GTACTGAAACATCAGGCAGGCAAA 3353644 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||||| || | ||||| ||||| || || | || |||||||| || || || ||||| Sbjct 3353643 GTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCAT 3353584 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 || |||| || || | ||| ||||| || |||||||| ||||| ||| | || ||||| Sbjct 3353583 GAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTC 3353524 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 || || ||||| || |||| || || || | || || || | ||||||| Sbjct 3353523 CACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCG 3353464 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 |||| | | |||||||| |||||| | ||| | || ||||| ||||||||| | Sbjct 3353463 CAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAA-A 3353405 Query 16483 Att--tttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 ||| ||||||||| |||| || ||||| |||||||||||||| ||||| ||||| Sbjct 3353404 ATTCCCTTTTCTTTG-GATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAG 3353346 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG-CTTCGGATATTTGTAC 16599 |||| |||||| || |||||||| ||||| ||||| || || |||| | | | Sbjct 3353345 TGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGGACC 3353286 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 | | || ||||| | || | |||||||| || || |||||||| || ||||||||||| Sbjct 3353285 TCCTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAA 3353227 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719 || | ||||| ||||||| || |||| | ||| || ||||| || | Sbjct 3353226 GGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAG 3353167 Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACAT 16779 | ||||| || || ||||||||| | ||||| ||||| || || | |||||||| Sbjct 3353166 GTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACAT 3353107 Query 16780 TTTCCATATGTC 16791 | |||| || || Sbjct 3353106 TCTCCAGATATC 3353095 Score = 125 bits (138), Expect = 7e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 ||| || ||||| | || ||||| || || || || || ||||| || || || | ||| Sbjct 12680224 GTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTC 12680165 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 || ||||||||||| || ||||| ||||| ||||| || | ||| ||||| | ||||| Sbjct 12680164 ATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAA 12680105 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 ||||| |||||||| || ||||| || |||||||| || || | || || || |||| Sbjct 12680104 AGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACG 12680046 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| |||||| Sbjct 12679786 GACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCT 12679845 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||| ||| ||||||||||| || ||||| ||||||| Sbjct 12679846 TCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 12679882 >seq9 Length=156508116 Score = 187 bits (206), Expect = 2e-42 Identities = 580/883 (66%), Gaps = 40/883 (5%) Strand=Plus/Plus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| |||| |||| ||| |||||||| ||||| |||||||||||||||||||||||| Sbjct 73422205 TGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTCC 73422264 Query 16007 ATAAAATCAAAAGGATTT-----TTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 || || ||||| || ||| | |||| ||| | || | | |||| |||| || Sbjct 73422265 ATGAAGTCAAATGGGTTTCCTACTCTGAA-AATCTTGTTAA----AACCCAGCTCCAGCA 73422319 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | |||| ||||||||||| || ||||| ||||| ||| ||||| || | || | Sbjct 73422320 TAAGCCTATTGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTTATCTCGATCA 73422379 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | ||||| | || || | | | | ||||| ||| | | | ||||| Sbjct 73422380 GCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCTAAACTCGTTGGCGATTA 73422439 Query 16182 TATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACAAG 16238 | ||| ||||| | || || || || || || | ||| || ||||| | | Sbjct 73422440 TTTCTTTTACT-CTCTGCTT--CGTTGGCTTGTATACCAGGTGCTTGAACATCAGGTAGA 73422496 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||| || || || || || ||||| || || || | ||| || ||||||||||| || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG-AAAAGAATATA 16357 ||| ||||| |||| || | ||| ||||| | ||||| ||||||| ||||||| || Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACC----GTACGTTCTAtttttactttc 16413 ||| || || ||||| || || | ||| || | ||| ||| ||| | | | Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTC--TTTGTCC--CC 73422672 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||| | ||||| | || || | ||||| ||| | || || ||||| Sbjct 73422673 AGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACAG-GCATTGTTTCAATAGCATT 73422725 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | ||| | |||||||||| |||| ||| ||||| || || || | ||| ||||| Sbjct 73422726 GAAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACAT 73422785 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 || || || || ||| | | | || || |||||||| || | ||| || | | Sbjct 73422786 TTTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAAC 73422844 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| | ||| | || | |||||| | || | ||| ||||| || || | Sbjct 73422845 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTAC 73422904 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGAAAGTTTTAACCAG 16711 ||| || || || | ||| ||||||| | | || | | | | || || |||| Sbjct 73422905 AAAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTT--CCCAG 73422962 Query 16712 T-CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 | | | | || || || | || ||||| || |||||||||| | || |||| || Sbjct 73422963 TGCTG--ATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTT 73423020 Query 16771 TTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACA 16813 || ||||| | ||| || || | ||| || ||||| ||| Sbjct 73423021 CTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGACA 73423063 >seq23 Length=145441459 Score = 167 bits (184), Expect = 2e-36 Identities = 583/902 (65%), Gaps = 31/902 (3%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| ||| | ||||| || | ||| ||| |||||||| | |||||| Sbjct 104692337 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTT 104692396 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT-----TTTGAACAATAGTAT 16039 |||||||| ||||||||||||| | || ||||| |||||| | |||| ||| | | Sbjct 104692397 TCCTTCTAGTGAAATATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAA-AATCTTCT 104692455 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 | | || |||| |||| | || || |||| |||||| || ||||| ||||| Sbjct 104692456 TAA---CA-CCCAGCTCCAGTGGAAGCCTGTCAGCCAAAAATTCAATGTACTGCTTCATC 104692511 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 ||| || || || | | || ||||| | || || | | ||| | | || Sbjct 104692512 AAAGTGCAATTTGCCCCGAAGAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCT 104692571 Query 16160 ATATTAACCGCTTCAATG-ATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAA 16218 || |||| | | || |||||||| ||||| | || || || || | Sbjct 104692572 ATCCTAACAGTGTTGGTGTTTTATATCTTTTACTCTTTGCTCCAATGGCTTGTGTACCAG 104692631 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 ||| || ||||| | || ||| | || || || || || | ||| || || || | ||| Sbjct 104692632 GTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTC 104692691 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 || |||| ||||||||| ||||| |||| || || || | ||| ||||| | | Sbjct 104692692 ATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCG------A 104692745 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA--C 16396 | | |||||| | ||||| || | ||||| || || | || || || || Sbjct 104692746 T------GCAAAGAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGG 104692799 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | || ||| | | | |||| ||||| | || || | || ||||| | Sbjct 104692800 GGACTCTTTGTCC--CCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 || | | || ||||| || | ||| | | |||| ||| |||| ||| ||||| || Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576 || || ||| |||||||| || || || || ||||| || || | || ||||| || Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | || || | | ||| ||||| | ||| | || | |||||||| || ||| Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TAT 16694 || ||||| || ||| |||| || || || | ||| ||||||| | | || | | Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 | | || || ||||| || | | || || | || ||||| | ||||||||| Sbjct 104693098 TTCAGAGCTT--CCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAA 104693155 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAA 16814 | || || |||| || || ||||| | ||| || || | ||| |||| ||||| |||| Sbjct 104693156 AGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAA 104693215 Query 16815 CA 16816 || Sbjct 104693216 CA 104693217 >seq32 Length=104043685 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||| ||||| ||| | | || ||||||||| | | | | ||| |||| | | Sbjct 37927243 CTTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAAT 37927302 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct 37927303 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTC 37927362 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 37927363 TCCATAAAATCAAAGGGATTTTCTG 37927387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||||| |||| || ||||| |||||||||||||| ||||| ||||| |||| | Sbjct 37945040 TTTTCTTTGG-ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACA 37945098 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||| || |||||||| ||||| ||||| | ||| || Sbjct 37945099 TTCTCGATGAGAATCTGAAAGCCATAGAAGCAGCGAGCCTC 37945139 >seq29 Length=120129022 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||| || ||||||||||| || ||||| || || ||||| || Sbjct 24711801 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 24711742 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 24711741 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 24711682 Query 16379 AC 16380 || Sbjct 24711681 AC 24711680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 24713193 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 24713134 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||||| ||| ||||||||||| || ||||| ||||||| Sbjct 24713133 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 24713093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510803250200