Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq26 1072 0.0 seq36 140 2e-28 seq30 87.8 1e-12 >seq26 Length=124595110 Score = 1072 bits (1188), Expect = 0.0 Identities = 1217/1614 (75%), Gaps = 46/1614 (3%) Strand=Plus/Minus Query 107164 TATTTGTCTATAGAAGACATCTATCTTTACCATCAC---TCTGGAGTTGAACTTGATGTT 107220 ||||| || | |||||| |||| | | | |||||| | ||||||||||||||| || Sbjct 70035449 TATTTTTCCAGAGAAGAGATCTCT-TCTGCCATCAGAAGTTTGGAGTTGAACTTGACATT 70035391 Query 107221 -CTGGA-----------TTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC- 107267 |||| ||||||| |||| | |||| |||||||||| || || | | Sbjct 70035390 TCTGGGATCCTGTTTCGTTAGTTTATAATCAGAGGCTCTTTGTTCTGTTCAGAGAACCCA 70035331 Query 107268 CTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATC-TCCCATCCCATGAAGATGGCTGG 107326 || | || ||| ||| || || || |||| ||| || |||||||| || Sbjct 70035330 CTGC-CCTCCTCTGCTGGGC---AAGGCT--TGATGGTCCTCGCCTGTGAAGATGACTTC 70035277 Query 107327 GTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCT 107386 ||| ||| | || ||| || ||| |||||| ||||||| ||||| ||||| || Sbjct 70035276 CTGGCAGAGG---CTCTGCTGGCACTATCGCCTGTGGACCCTGGGTTGCTACATGCTACT 70035220 Query 107387 GGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCT 107446 |||| | || | |||| ||| |||||||| | || ||||| | ||| || ||||||| Sbjct 70035219 GGCCATCCTTGCCCTGAAACTGTCCCTCAGACTGAAGTGTGACTTCGATGCCATGGATCT 70035160 Query 107447 GGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCT 107506 ||| || ||| || || || ||| |||| ||||| | ||||||| | ||||||||| Sbjct 70035159 GGACTCTGAGGAATTTCAAAGCCAGTACTGCAGGGATCTCCTGTACAAGACCCTGAAGCT 70035100 Query 107507 GCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGT 107566 |||||| ||||| ||||||||||| || ||| ||| |||||||| ||| |||| ||| Sbjct 70035099 GCCAGCCAAGAGTTCCATCAACTGCTCAGGGGTCATTCGAGGGGAGCAGAAAGCGGTGAC 70035040 Query 107567 CCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTA 107626 |||||| || || | ||||||||| | ||||| |||| | || |||| | || | Sbjct 70035039 CCAGGCTCTGCTGAATAACCTGGAAATTAAGAAGAAGCAGCAGCTCTTCACAGAGGCCGA 70034980 Query 107627 TTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| | || || ||||||||||| ||||||| || | |||||||| |||||| | Sbjct 70034979 CTACCTTAGGATGACAGCAGACTGTGAGCACTTCAAGACCAAGAGGAAGTTTATACAGGT 70034920 Query 107687 CCCACTGAGTAAAGAAGAG-CTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 ||||||||| || |||||| | || |||||||||||| ||||| |||||||| ||||||| Sbjct 70034919 CCCACTGAGCAAGGAAGAGGCCAG-CTTCCCCATTGCGTACTCCATGGTGGTGCATGAGA 70034861 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 ||||||| ||||| ||| || |||||||||| ||||| |||||||||| ||||||||| Sbjct 70034860 AGATTGAGAACTTCGAAAGGTTGCTGCGAGCTGTGTACACCCCTCAGAATGTATACTGTG 70034801 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||| ||||| |||||| |||| | || || |||| |||| |||||| | || | Sbjct 70034800 TCCACATGGATCAGAAGTCTTCAGAACCCTTTAAGCAGGCAGTCAGGGCCATCGTGTCAT 70034741 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||||||||||||||||| || ||||||||||| | ||||| ||||| |||||||||| Sbjct 70034740 GCTTCCCCAATGTCTTCATAGCTAGTAAGTTGGTGTCAGTGGTCTATGCTTCCTGGTCCA 70034681 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | ||||| |||||||| ||||| |||||||||||||| |||||| | ||||||||||| | Sbjct 70034680 GGGTGCAGGCTGACCTAAACTGCATGGAAGACTTGCTTCAGAGCCCCGTGCCATGGAAAT 70034621 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | ||||| || || ||||||||||| ||||| || |||||||| ||||||||| || Sbjct 70034620 ACCTCCTGAACACCTGTGGGACAGACTTTCCCATCAAAACCAATGCTGAGATGGTCAAGG 70034561 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||||| | ||||| || |||||||||||||||| |||||||| || || || Sbjct 70034560 CCCTCAAGCTATTGAAAGGGCAGAACAGTATGGAGTCAGAGGTACCACCTCCA--CATAA 70034503 Query 108106 aaaaTC--GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 |||||| |||||||||| | ||||||||||||||||||| || || |||||||||| Sbjct 70034502 AAAATCCCGCTGGAAATATCACTATGAGGTGACAGACACATTGCACATGACCAGCAAGAG 70034443 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 |||| || || ||| |||| || |||||||||| ||||||||||| | ||||| || Sbjct 70034442 GAAGACGCCGCCACCTAATAACCTAACCATGTTCACTGGGAATGCCTACATGGTGGCTTC 70034383 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 ||||| ||| | |||| || || ||| | ||| ||| |||| | || ||||| Sbjct 70034382 TCGAGACTTCATTGAACACGTGTTCAGTAACTCAAAAGCCCGGCAACTGATCGAGTGGGT 70034323 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||||| Sbjct 70034322 AAAAGACACCTATAGTCCCGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCGTGGAT 70034263 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 |||||| || | ||| || | || | | || | |||||||||| ||||| || || Sbjct 70034262 GCCTGGATCAGATCCCTTGCATCGAAAATTTGACCTGTCAGACATGAGAGCCATTGCGAG 70034203 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || ||||||| | |||| |||||||| | | ||||| ||||| | | || Sbjct 70034202 ACTAACCAAGTGGTACGACCATGAGGGAGACATTGAGAACGGGGCACCTTACACGTCTTG 70034143 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 ||| |||||||| | | |||| |||| |||| ||| | ||||||||| ||||||| || Sbjct 70034142 CTCAGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGTCAGGGGACCTGCACTGGATACT 70034083 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 |||||||||||||||||||| |||||||||||||| | |||||||||||| || || || Sbjct 70034082 TCAGAACCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCA 70034023 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACT 108643 ||| |||||||| || ||||||| || |||||||||||||||||||| |||| |||| Sbjct 70034022 GTGTTTAGAAGAATATTTACGTCACAAAGCCATCTATGGGACTGAACTATGAG--ACACT 70033965 Query 108644 GTGGGCC---AGGGAC---TGTGCC---AACATGCCCAGGGCGTACTGGTACTGTGTGGG 108694 || | | | || |||| | || ||| ||||| | |||||| | ||||||| Sbjct 70033964 GTAAGACTATTGTTACCTGTGTGGCAAGAAAATG-CCAGGACCTACTGGGGCAGTGTGGG 70033906 Query 108695 GTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 || | | ||||| | || ||||| | |||| ||| | || |||||||| Sbjct 70033905 GTAGATAGCTGGGGCTCTAGACTCCAT-GTGTCCCTTAGGATGAGGGGGCTGCT 70033853 >seq36 Length=61431566 Score = 140 bits (154), Expect = 2e-28 Identities = 582/897 (65%), Gaps = 51/897 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || | |||||||||| ||| ||| || ||||| || || || ||||| ||| | ||| Sbjct 17330023 CCCCTTACTAAAGAAGAGGTAGGCTTTCCAATTGCATATTCCATTGTGGTTCATCATAAG 17329964 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 17329963 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 17329904 Query 107808 CACGTGGAT-GTGAAGTCCCCAGAGA---CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| | ||| ||||| | || || ||||| ||| ||| || Sbjct 17329903 CACGTGGACAGAAAAG----CAGAGGAATCCTTTTTAGCCGCGGTGCAGGGCATCGCATC 17329848 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| |||||||| ||||||| |||||| || |||||||| |||||| Sbjct 17329847 CTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCGTCCTGGAG 17329788 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || | || ||||| ||||| ||| | ||| || | |||| | | ||| | ||| Sbjct 17329787 TCGGGTTAAGGCAGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAATGCAAACTGG 17329730 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 17329729 AAGTACTTGATCAATCTCTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTC 17329670 Query 108042 CTGGCCCTCAAGATGTTGA-AGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGA 108097 | |||||| | | |||| || |||| |||| ||||| | ||| | | Sbjct 17329669 AGGAAGCTCAAGTGCTCCACAGGGGAA-AACAACCTGGAAACTGAGAAGATGCCTCCCAA 17329611 Query 108098 GTCCaaaaaaaaTCGCTGGAAATA--------CCGCTAT-GAGGTGA--CAGAC--ACAC 108144 ||| || | | |||||| | ||| | | || | || | ||| |||| Sbjct 17329610 ---CAAGGAAGAGAGATGGAAAAAAAGATACACCGTTGTCGATGGGAAGCTGACCAACAC 17329554 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGG 108203 || | || ||| ||| |||| |||| || | || | || |||| Sbjct 17329553 TGGAAT---------AGTCAAAGCACCGCCCCCACTGAAAACT--CCTCTCTTTTCAGGC 17329505 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | |||||| || |||| | || | | | ||| | || | || || || || Sbjct 17329504 AGTGCCTACTTCGTGGTCACTAGGGAATATGTAGGCTACGTGCTGGAAAATGAAAATATT 17329445 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | |||| || | ||||||| | ||||| || ||||| || || |||||||||||| Sbjct 17329444 CAAAAGT-TGATGGAATGGGCACAGGACACATACAGCCCAGATGAGTTCCTCTGGGCCAC 17329386 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCC-CAAGTATCACATC 108380 | | || | | ||| | | | ||||| ||| |||| | | | ||||||| || | Sbjct 17329385 CATCCAAAG-GATCCCAGAAGTCCCTGGTTCT-TTCCCCTCAAGCAACAAGTATGACTTG 17329328 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 |||||||||| |||||| || ||| | ||||||||||||||| ||| || |||| | Sbjct 17329327 TCAGACATGAATGCCATTGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGCCATGTTTCC 17329268 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | || || |||||| |||| ||| |||| |||| | | | | ||| | | ||| Sbjct 17329267 AACGGTGCCCCTTATCCACCGTGCAGTGGAGTCCACGTGCGCTCTGTGTGCGTCTTCGGA 17329208 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || |||||| || | | || ||||| || || || ||||||||| Sbjct 17329207 GCTGGTGACTTGAGCTGGATGCTGCGCCAACACCACCTTTTTGCCAATAAGTTTGAC 17329151 >seq30 Length=120421639 Score = 87.8 bits (96), Expect = 1e-12 Identities = 234/350 (67%), Gaps = 16/350 (5%) Strand=Plus/Plus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCC 107787 ||||| ||||| | || |||| | ||||| | |||| | | || | | ||||| Sbjct 40887661 ATGGTCATCCATCACAATTTTGACACCTTTGCAAGGCTCTTCAGGGCAATCTTCATGCC- 40887719 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGG 107847 ||| || || |||||||| |||||||||| ||| | ||| ||||||| || | Sbjct 40887720 -TCAAAATATCTACTGTGTTCACGTGGATGAAAAGGCAACAGCTGAATTCAAAGGTGCCG 40887778 Query 107848 TCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 | | | ||| | |||||||||||||| ||| |||| |||| ||| |||||| Sbjct 40887779 TGGAA-CAGTTAGTGAGCTGCTTCCCCAATGCCTTTCTGGCTTCTAAGATGGAGCCGGTG 40887837 Query 107907 GTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 || |||| ||| ||| | | || |||||||||||||| || ||||| || | Sbjct 40887838 GTCTATG----GTGGAATCTCCCGGCTCCAGGCTGACCTGAACTGCATCAAAGACCTG-T 40887892 Query 107963 CCAGAGCTCA-GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAA 108021 ||| | | || || ||||||||| | || || || || |||||||||| | | Sbjct 40887893 CCACCTCCGAGGTCCCCTGGAAGTACGCCATCAACACCTGTGGACAAGACTTCCCCCTGA 40887952 Query 108022 AGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAAC 108071 | ||||| ||||| || | | ||| || | | ||||| |||||| Sbjct 40887953 AAACCAACAAGGAGATAGTTCAGTACCTGAAAGGGCTTAAGGGGAAGAAC 40888002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348267921383118