Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq27 246 2e-60 seq16 86.0 5e-12 >seq27 Length=130694993 Score = 246 bits (272), Expect = 2e-60 Identities = 538/803 (67%), Gaps = 27/803 (3%) Strand=Plus/Plus Query 19987 GGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTT 20046 || ||||| || | | || || || ||||| | |||| | | ||||| |||||||| Sbjct 87966973 GGCACTGGCACCCTGTAGGTGTTCGGCATGCAGGCACGATCCAGCCTGAGAGATGAATTT 87967032 Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 || | | || || ||| | || || ||||| || ||| | || ||||| || |||||| Sbjct 87967033 CCTCTGCTCACAACCAAA-GAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTT 87967091 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGG-AGTTAAGATTTGGAGCGC 20165 || || ||||| |||||| ||| || |||| |||| ||| | || ||| || Sbjct 87967092 ATCAAGGGATCCACAAATGCTAAAGAA-TTGTCCTCCAAGGGAGTGAGAATCTGGGATGC 87967150 Query 20166 ACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTT 20225 || |||| | ||| | ||||| |||||| ||| || || ||||| | Sbjct 87967151 TAATAGATCCCGAGACTTTCTGGACAGCTTGGGATTTTCTGCCCGACAGGAAGGGGACCT 87967210 Query 20226 GGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACAC 20285 ||| || || ||||| || |||||||| ||||||||||| || || |||||| | | Sbjct 87967211 GGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGACATGGATTC 87967270 Query 20286 AAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAA 20345 | |||| | |||||||||||||| || | ||||| || ||| | || ||||| || Sbjct 87967271 AGATTACTCAGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAA 87967330 Query 20346 CCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGC 20405 ||| | ||||||||||| | | || ||||||||| | |||||| | || | ||||| Sbjct 87967331 CCCTGATGACAGAAGAATCA---TGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGC 87967387 Query 20406 ----TTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGT 20461 ||||||| || ||| || || || || || | | ||| || | || | Sbjct 87967388 ACTGCCTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATATGGTGAATGGGGAGCTATCTT 87967447 Query 20462 GTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTT 20521 | || | || || | || | |||||||| |||||||| || ||||| ||||| || | Sbjct 87967448 GCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCAGCT 87967507 Query 20522 ATGCGCTGCTTACGTATATGATTGCACATGTTACAG----------ATTTAAAAACGGGT 20571 ||| ||||| || || |||||||||||| | |||| |||| | | ||| Sbjct 87967508 ATGTTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAGACATTTTTAGCCAGGT 87967567 Query 20572 GACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAA 20631 || || ||||||| | ||||| || ||||||||||| ||||||||||| || | ||| Sbjct 87967568 GATTTTGTCCACAATTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAA 87967627 Query 20632 TTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAA 20691 | ||| || | | | || ||||||| || || ||||| | | | Sbjct 87967628 ATTCAGCTA-------CAGCGAGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGGTGAG 87967680 Query 20692 GATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCA 20751 || | ||||| |||| ||| || ||| | | ||||| |||||||| ||| | Sbjct 87967681 ACAATCGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACG 87967740 Query 20752 ATTCCAATGGAAATGTCTGTTTA 20774 ||| |||||| || ||||||| Sbjct 87967741 ATTAAAATGGAGATAGCTGTTTA 87967763 >seq16 Length=151834684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||||| || ||| || || || || || || | || Sbjct 30063413 AGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAA 30063354 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||| |||| || || | || || | || | |||||||| ||||| || || || Sbjct 30063353 TGGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTT 30063294 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || ||||| ||||| || || |||||||||||| | |||| Sbjct 30063293 CAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAG 30063244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182992933615