Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq30 288 1e-72 seq9 183 3e-41 seq23 174 2e-38 seq32 102 8e-17 seq29 96.9 3e-15 >seq30 Length=120421639 Score = 288 bits (318), Expect = 1e-72 Identities = 602/883 (68%), Gaps = 23/883 (3%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 3353930 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 3353871 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 14034 ||||||||||| |||||| || | ||| | || | | || || ||||||| ||||| Sbjct 3353870 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTACAAGTAA 3353812 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| || || | | ||| |||| ||||| || || || Sbjct 3353811 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCC 3353752 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | |||||||| || | || || ||||| || || || Sbjct 3353751 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 3353692 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | | || | ||||| || || | ||| || | || ||||| || Sbjct 3353691 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 3353641 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| ||||| || ||||| || || || ||||| |||||||| || | ||| ||||| | Sbjct 3353640 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAG 3353581 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 |||| || |||| ||| ||||||||||| |||||||| || ||| | ||||| || || Sbjct 3353580 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 3353521 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||||| || | | || ||| ||||| | | ||| | | | |||||| Sbjct 3353520 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 3353461 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT- 14453 |||| | || | |||||| |||| | | |||||||||||| || ||||||||| || Sbjct 3353460 AGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 3353401 Query 14454 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 3353400 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 3353343 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG-CTTCTGACCATTGTACCT- 14570 | || || || |||||||| ||||| || || || || | || | || |||| Sbjct 3353342 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC-CTGGACCTC 3353284 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 |||| ||||| | || |||| |||||||| || || |||||||| ||||||||||| | Sbjct 3353283 CTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGG 3353225 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTC--ATTGCTGAGTTTTTTCCAATCGGCTAA 14688 | || |||| ||||| || | ||| || ||| | || || ||||| | | | Sbjct 3353224 CTAAGATGTGGGAGATAAAATACTTCTCGTCGGATT--TAAGCTTGTTCCAGTGAGGGAG 3353167 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 | ||| || | || || || || ||||||| ||| || |||| |||||||| Sbjct 3353166 GTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACAT 3353107 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 | ||| || || ||| || ||||| | ||||| ||| Sbjct 3353106 TCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCTT 3353064 Score = 143 bits (158), Expect = 3e-29 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 12680226 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 12680167 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| | || ||||||| ||| ||||| || | ||| ||||||| || Sbjct 12680166 TCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCA 12680107 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || ||||||||||| ||||| || || || ||||| || | | || ||||||| || Sbjct 12680106 AAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATAC 12680047 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | || | ||||| | ||||| ||||| |||| || || || | | || | Sbjct 12680046 GCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 12679987 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTC 14454 || |||||||||||||| || | || ||| Sbjct 12679986 ATAGTTTCAATAGCATTGAAGAGATATTC 12679958 >seq9 Length=156508116 Score = 183 bits (202), Expect = 3e-41 Identities = 391/578 (68%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||| || || || | ||||| ||||| |||||||| || || |||||||| | || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA-GAATATT 14326 ||| || ||| |||| || | ||| ||||| | || || || || ||||| ||| ||| Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || |||||||| || | | ||||||| || | |||| ||||| | || Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCAGTC 73422676 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || | ||||| |||| || | | | |||||||||||||||||| || Sbjct 73422677 CAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATAGCATTGAAA 73422729 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | || ||| || ||||| | | | |||||| || |||||||| | || ||||||| | Sbjct 73422730 AGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTA 73422789 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 ||||||||| |||| | | | || || |||| |||||| | ||| |||| ||| Sbjct 73422790 GAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACTTGA 73422848 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || ||| | ||||| || |||| ||| |||| | ||| |||||||| || |||| Sbjct 73422849 ACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAG 73422908 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTC--ATTGCTGAGTTTTTTCCAATCGG 14684 || |||| | || ||||| | | ||| || || | ||| || ||| | | Sbjct 73422909 AAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAG--CTTCCCAGT--G 73422964 Query 14685 CT-AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 || | ||||| ||||| || || || ||| | |||||||| | || ||||||| || Sbjct 73422965 CTGATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTTG 73423024 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 ||||| ||| || || | || | || ||||| || Sbjct 73423025 TACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 73423062 >seq23 Length=145441459 Score = 174 bits (192), Expect = 2e-38 Identities = 403/606 (67%), Gaps = 20/606 (3%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || || || || || | || ||| | || || || | |||| ||||| |||||||| Sbjct 104692630 AGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGC 104692689 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||| ||| | || ||||||| || || || || | ||| ||||| | || Sbjct 104692690 TCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC- 104692748 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 |||||| | ||| || || ||||||| || | | || ||||||| | Sbjct 104692749 -----------AAAGAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATAT 104692797 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | | | ||||| | |||| ||||| |||| || || || | | || | Sbjct 104692798 GGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14485 ||||||| ||||||||| || | || ||| | || || | | | |||||| || ||| Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||||| || |||||||||||||||||||||||||| || || | || ||||| ||| Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 14546 CATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14605 || | || |||| ||| || ||| | ||||| || |||| |||||||| ||| Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 14606 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC--AT 14663 || |||||||| ||| |||| || |||| | || ||||| ||| ||| || | Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 14664 TGCTGAGTTTTTTCCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCA 14721 | | ||| || ||| | | | ||| |||| ||||| || || || | | ||||| Sbjct 104693098 TTCAGAG--CTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCA 104693153 Query 14722 AAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 ||| || ||||||| || ||||| ||| || || | ||| || ||||| || Sbjct 104693154 AAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGAC 104693213 Query 14782 TACAAA 14787 ||||| Sbjct 104693214 AACAAA 104693219 >seq32 Length=104043685 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 37937217 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 37937276 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 37937277 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 37937335 >seq29 Length=120129022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| ||||| || || || ||||| | Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 24711683 CCACAACGCGTTCTCC 24711668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||||||||||||||||||||| || || || Sbjct 24710473 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 24710414 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | || |||| Sbjct 24710413 GAAGCCATAGAAACAGCGGGCCTCTG 24710388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344351930760