Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 2e-12 seq26 84.2 2e-11 seq9 84.2 2e-11 >seq16 Length=151834684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||||||||| || || || || ||| | || ||||| | || Sbjct 125388261 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGT 125388202 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| ||| || | || || ||| | || ||||||| Sbjct 125388201 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 125388142 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | | || | ||| ||||| || ||||||||| | || || || |||| | Sbjct 125388141 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 125388082 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| |||| || || Sbjct 125388081 ATCCAGAAAGAGTCCACCCTGCA 125388059 >seq26 Length=124595110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 || ||||||||| || || || ||| | || ||||| || || || | || ||||| | Sbjct 19928286 CAACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCC 19928227 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || |||| | || | ||| |||| || || | || |||||| | || ||| Sbjct 19928226 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGA 19928167 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| | | |||| ||||||||||| ||||| ||| | | || || ||| || Sbjct 19928166 CCAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCTCACCCTGTCCGACTA 19928107 Query 25008 CAGCATACAGAAAGAGGCCAC 25028 || ||| ||||||||| |||| Sbjct 19928106 CAACATCCAGAAAGAGTCCAC 19928086 >seq9 Length=156508116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 || ||||||||| || || || ||| | || ||||| || || || | || ||||| | Sbjct 3973564 CAACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCC 3973505 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || |||| | || | ||| |||| || || | || |||||| | || ||| Sbjct 3973504 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGA 3973445 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| | | |||| ||||||||||| ||||| ||| | || || ||| || Sbjct 3973444 CCAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTA 3973385 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||| ||||||||| |||| | || | ||| | || ||||||| || Sbjct 3973384 CAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGG 3973334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418302944697440