Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq30 107 4e-18 seq9 93.3 8e-14 seq16 86.0 1e-11 seq29 84.2 4e-11 >seq30 Length=120421639 Score = 107 bits (118), Expect = 4e-18 Identities = 296/453 (65%), Gaps = 13/453 (3%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||| |||| | | || ||||||||||| || |||||||| | ||| ||| |||| Sbjct 3353491 TTTGG-GGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATT 3353549 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || | || |||||| | ||||| || || | ||||||| || || | || ||||| Sbjct 3353550 TGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGA 3353609 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | || ||||| ||||||||||| | |||||||| ||| || |||| | | Sbjct 3353610 ACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTTCA-----G 3353664 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 | | | || ||| ||| || | ||||| | |||| || || | ||| Sbjct 3353665 T-------ACAAGCCTTCAGAAGACAGAGTGAGGGAAATCATTGCTGATGCTGTTCAAAT 3353717 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 ||| || || ||| | |||| || |||||||| | | ||||||||||| || Sbjct 3353718 TGAGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCATTGGAATGAACTGTGTTTT 3353777 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAA 102261 || || ||||||||||| ||||| || || | | || | || ||| | ||| | ||| Sbjct 3353778 GACGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTGTAGAACTTGGATTCTCAAA 3353837 Query 102262 GCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGAC 102321 | | | | | || ||||| || ||||| || ||||| | || || || Sbjct 3353838 GATTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGGGAAAAC 3353897 Query 102322 CAACTTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 || || ||||| || |||| | |||||||| Sbjct 3353898 AAATTTCTTTGAGAAACGAGTTTCTGAGTATCA 3353930 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| ||| | || ||||| || || | Sbjct 12680061 TTGTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTGT 12680120 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || || || | ||||||||| | ||| || | Sbjct 12680121 GGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAG 12680180 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 |||| ||| | || | |||||||| ||| || |||| || Sbjct 12680181 ACGAGGGTTTACACTGGGACTTTGCCTGCCTGATGTTCAA 12680220 >seq9 Length=156508116 Score = 93.3 bits (102), Expect = 8e-14 Identities = 295/452 (65%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 101906 GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTC-TTTAGTGGTGCATTCGC 101964 || |||| | |||| ||||||||||| || ||| ||||||| ||| |||| | || || Sbjct 73422651 GCAGAACGAGTTGTGGCCTTTGCTGCGGTAGAACCAATCTTCTTTTTCTGGTTCTTTTGC 73422592 Query 101965 ATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTT 102024 | | || |||||| ||||||| ||| | |||| || || || | ||||||||| | Sbjct 73422591 ACCGATATTCTGGCTCAAGAAACAGGGACTGGTGCCGGGCCTTACATTTTCCAATGAGCT 73422532 Query 102025 CATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT 102084 ||| || ||||| ||| | || | ||||||| | | || |||| ||| | Sbjct 73422531 TATTAGCAGAGACGAGGGTTTACACTGGGACTTTGTCTACCTGATGTT---CAAGCACCT 73422475 Query 102085 TGTTGATACCCCATC-AAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATT 102142 || | | ||| | ||| ||| || | ||||| || | | | | | || Sbjct 73422474 GGTATACAAGCCAACGAAGCAGAGAG--TAAAAGAAATAATCGCCAACGAGTTTAGGATA 73422417 Query 102143 GAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTG 102202 || || | | |||| | || ||||||| | | | | || ||||||| ||| Sbjct 73422416 GAGCAGGGGATCCTCATGGAGGCCTTGCCTGTGATGCTGATCGAGATAAACTGCACTTTG 73422357 Query 102203 ATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAG 102262 |||| |||||||||||||||||||| ||| || || | || |||| | | ||| Sbjct 73422356 ATGAAGCAGTACATTGAATTTGTGGCCAATAGGCTTATGCTGGAGCTGGGTTTTAACAAG 73422297 Query 102263 CACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACC 102322 | | || ||||| || |||||||| |||||||| | || ||||| Sbjct 73422296 ATTTTCAGAGTAGGAAACCCATTTGACTTCATGGAAAATATTTCATTAGAAGGAAAGACA 73422237 Query 102323 AACTTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||||| ||| |||| | |||||||| Sbjct 73422236 AACTTCTTTGAGAAGCGAGTAGGTGAGTATCA 73422205 >seq16 Length=151834684 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTA 35624 ||||||| ||| ||||| || ||||| ||||| || | || || || ||||||| | Sbjct 30063412 GATCTTCCCCTGATGGCACTGCCTCCTTGCCA--TGCCCTCTGTCAGTTCTATGTGGTGA 30063355 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 |||| ||| |||| |||||| | || ||| | |||||| | || |||||||||||| Sbjct 30063354 ATGGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCT 30063295 Query 35685 TCAATATTGC 35694 |||| ||||| Sbjct 30063294 TCAACATTGC 30063285 >seq29 Length=120129022 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| ||| | || ||||| || |||| Sbjct 24711678 TTGTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCT 24711737 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || || || | ||||||||| | ||| || | Sbjct 24711738 GGCTCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAG 24711797 Query 102036 ACGA 102039 |||| Sbjct 24711798 ACGA 24711801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581375437685