Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq30 331 9e-86 seq23 145 7e-30 seq9 136 4e-27 seq32 120 3e-22 >seq30 Length=120421639 Score = 331 bits (366), Expect = 9e-86 Identities = 611/885 (69%), Gaps = 32/885 (4%) Strand=Plus/Minus Query 11342 TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCC 11401 ||||| ||| ||||||| || || ||||| || || ||||||| ||| || | |||| Sbjct 3353930 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 3353871 Query 11402 ATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACT-CTGTTAATAA 11460 ||||| ||| ||||| | | | | ||| | | ||| | || | || | || | ||| Sbjct 3353870 ATAAAATCAAAGGGATTTTCTGCCT-GAAAAATCTTTGAGAATCCAAGTTCTACAAGTAA 3353812 Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 ||| || || || || || || ||||| | | ||| ||| ||||| || || || | Sbjct 3353811 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCC 3353752 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTAT 11577 || || | || |||| |||||||||| || || | ||| |||||| |||||| Sbjct 3353751 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 3353692 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | | | |||| || | |||| | || |||| | || ||||| Sbjct 3353691 CCTCACTCTGTCTTCTGAAG-----GCTTGTACTGAA-------ACATCAGGCAGGCAAA 3353644 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||| || | |||||| || || || || |||||||| ||||| || | ||| ||||| Sbjct 3353643 GTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCAT 3353584 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 | |||| || |||| ||| ||||| ||||||||||| ||||| ||| | ||||| || Sbjct 3353583 GAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTC 3353524 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA---GATATCCAT 11812 |||||| ||||| || || |||||||| ||| | || | || ||| | |||||| Sbjct 3353523 CACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGAT--TTCCTATCTGCTATCCAG 3353466 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||| | || ||||| || || || || ||||||||| || |||||||||||| Sbjct 3353465 CGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAA 3353406 Query 11873 TGCATT---TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 ||| |||||| | |||||| | || || ||||||| |||||| ||||| ||| Sbjct 3353405 --AATTCCCTTTTCT-TTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCT 3353349 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || |||| ||| || || || ||||| |||||||| || | | ||| | | ||| Sbjct 3353348 GAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGG 3353289 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || ||| | ||| | ||| | || || ||||||||||| |||||||| | ||||||| Sbjct 3353288 ACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAA 3353229 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTATCCCAATCATC 12108 || |||| || || ||||| || || ||||| | |||| || | ||| | | Sbjct 3353228 AAGGCTAAGATGTGGGAGATAAAATACTTCTCGTC-GGATTTAAGCTTGTTCCAGTGAGG 3353170 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | | ||||| || || || ||||| | ||||| ||| |||| || ||| ||||| Sbjct 3353169 GAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATA 3353110 Query 12169 CATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||| ||||||||||| |||||| || || || || || ||||| Sbjct 3353109 CATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 150 bits (166), Expect = 2e-31 Identities = 188/257 (73%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 || || ||||| | || ||||| || || |||||||| |||||||| || || || ||| Sbjct 12680223 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 12680164 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || |||||||| | || ||||||| ||| ||||| || | ||| ||||| | ||||| Sbjct 12680163 TTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAA 12680104 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---T 11791 ||||| |||||||| ||||| || || || ||||| || || |||||||||||||| Sbjct 12680103 GAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCA 12680044 Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| ||| ||||| |||||| ||||| ||||| || || || ||| Sbjct 12680043 GCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATA 12679984 Query 11852 GTTTCTATAGCGTTAAA 11868 ||||| ||||| || || Sbjct 12679983 GTTTCAATAGCATTGAA 12679967 >seq23 Length=145441459 Score = 145 bits (160), Expect = 7e-30 Identities = 495/767 (65%), Gaps = 32/767 (4%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || |||||| | ||||| || | ||| | || || || | || || ||||||||| Sbjct 104692347 ACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGT 104692406 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGA-CTTTTTCACAACCTAA 11448 || |||| ||| | ||| ||| ||||| | ||| |||| | ||| || ||| || | Sbjct 104692407 GAAATATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCC-AG 104692465 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| | | || || || | ||||| || ||||| ||| ||| ||||| Sbjct 104692466 CTCCAGTGGAAGCCTGTCAGCCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTTGC 104692525 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || | || | ||| || | ||| | | | |||||||| |||| |||| | | Sbjct 104692526 CCCGAAGAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTATCCTAACAGTGTT 104692585 Query 11569 AATGATT-ATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 || || || ||| || || |||| |||| | || || ||||| | Sbjct 104692586 GGTGTTTTATATCTTTTACTCTTTGCTCCAATGGCTTGTGTACCAGGTGCTTGAACATCA 104692645 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || ||| | || || |||||||| | |||||| || || || ||||| |||| ||| | Sbjct 104692646 GGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCATTGGAAAGTGTAA 104692705 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 || ||||||| || || || || | ||| ||||| | ||||| || Sbjct 104692706 GACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA------------GA 104692753 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGC 11801 | | ||| ||||| | ||||| || || |||| |||||||||| | |||| | Sbjct 104692754 AGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGGGGACTCTTTGTCCC 104692813 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 || |||| |||||| ||||| ||||| || || || |||||||| |||| Sbjct 104692814 CAG---TCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAG 104692870 Query 11862 CGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----A 11917 | || || | || | |||| | |||| ||| ||||| | | ||||| | Sbjct 104692871 CATTGAAGAGATATTCTCTTTCCTTGGAATCT-TTA---ATGTAAGTGTCAATAAGGGGA 104692926 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 || |||||||| || || || |||||||| || |||| || ||||||||||| || ||| Sbjct 104692927 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGGCC 104692986 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| | || || || ||||| ||| | || || ||||| || || |||||| Sbjct 104692987 TCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCA 104693046 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 || | | |||| || || || | || |||||| ||| | || || Sbjct 104693047 CTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATC 104693093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA-TT 38471 || || || || || | |||||||| ||||| ||||||| || || || || || || Sbjct 102451042 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAACCACTTCTCAGA-AAGTAGGTT 102450984 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 || ||||| ||| || |||| ||||| | |||||| || | ||| |||||||| | Sbjct 102450983 GTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAA 102450924 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||| ||||||||||| Sbjct 102450923 CATATGCTGTGGTCTTTC 102450906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || || ||||||| || || || || || ||||| || |||||| Sbjct 102463783 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 102463724 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 ||||||||||| | | || || | || || |||||||||||||| || || || Sbjct 102463723 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAG 102463668 >seq9 Length=156508116 Score = 136 bits (150), Expect = 4e-27 Identities = 383/577 (66%), Gaps = 22/577 (4%) Strand=Plus/Plus Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| || || |||||||| |||||||| || || || ||||| |||||||| | || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG-AAAAGAATATT 11752 ||| || ||| |||| || | ||| ||||| | ||||| ||||||| ||||||| ||| Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA--TATACCTTGTTGCTAGATA-TC 11809 || || || ||||| || || |||| |||| || | || ||| || | | || Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCAGTC 73422676 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || | |||||| ||||| |||| | || ||||||||| ||||| || || Sbjct 73422677 CAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAAA 73422729 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | || ||||||| | |||| | | || || || || | | ||| ||||||| Sbjct 73422730 AGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTA 73422789 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || || || |||| | | |||| || ||||| ||||| | ||||||| | || Sbjct 73422790 GAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATA-AAACAGCCAGCCTCTGTAACTTGA 73422848 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || || ||||| ||| | || || |||| | || |||||||| | |||| Sbjct 73422849 ACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAG 73422908 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTC----TTTAGTTAATTTATCCCAATC 12105 || || || | || |||||| | | | || || || || | | ||||| | Sbjct 73422909 AAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAG--AGCT--TCCCAGTG 73422964 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | | || || || | || || || ||| | |||||||| | ||| | | || || Sbjct 73422965 CT-GATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTT 73423023 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 ||||| | |||||||||||| |||| || |||||| Sbjct 73423024 GTACATCTGCCAGATATCATGGTACTAGAT-GGGAAA 73423059 >seq32 Length=104043685 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 37937215 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 37937274 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 37937275 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 37937334 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 37937335 CCACCACTCTTTCCCC 37937350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523587692080