Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq27 196 4e-45 seq16 109 5e-19 >seq27 Length=130694993 Score = 196 bits (216), Expect = 4e-45 Identities = 410/606 (68%), Gaps = 10/606 (2%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||| || || |||| || || || || | |||||||| ||||| || || Sbjct 87967548 CAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCTGGCAATGTTGAAGGG 87967489 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | ||||||||||| |||||||| || |||||||| | Sbjct 87967488 CACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCAC 87967429 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGA----GCCATCCGCGCGAGGTCCG 21165 || || |||||||| | | || |||||||| || |||||| | | || || Sbjct 87967428 CATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGGGGAAGATCTT 87967369 Query 21166 CGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCA 21225 |||||||| || ||||| ||| | | || | || | || || || | Sbjct 87967368 TTGGGTTCCAGGCACACAT---GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAA 87967312 Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285 ||| | |||||||||| || || || || ||| | | || | |||||| Sbjct 87967311 TCACTTTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAATCCATGTCTTTGTACT 87967252 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGT 21345 | || |||||||| ||||| ||||| || || || || ||||| || || || | ||| Sbjct 87967251 CTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGG 87967192 Query 21346 CCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG 21404 | || ||| || | ||| |||| | ||||| | | || ||||| ||| | || Sbjct 87967191 CAGAAAATCCCAA-GCTGTCCAGAAAGTCTCGGGATCTATTAGCATCCCAGATTCTCACT 87967133 Query 21405 CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCC 21464 || | |||| ||| | | | ||||| ||| |||||||||||| |||||||||| Sbjct 87967132 CCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCC 87967073 Query 21465 ACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTA 21524 | || ||| |||| ||||| | |||||| || | ||||||||| || || || ||| | Sbjct 87967072 AAAACACCCTTCCAGAACACTC-TTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTG 87967014 Query 21525 TATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGC 21584 |||| ||||| | |||||||| || |||||| |||| | | ||||||| ||| Sbjct 87967013 GATCGTGCCTGCATGCCGAACACCTACAGGGTGCCAGTGCCCATGCGGTCCTCCTTCTTG 87966954 Query 21585 ACGCCG 21590 | |||| Sbjct 87966953 AAGCCG 87966948 >seq16 Length=151834684 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||| || || |||| || || || || || |||||||| ||||| || || Sbjct 30063239 CAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGG 30063298 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | ||||||||||| |||||||| ||||| ||||| | Sbjct 30063299 CACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCAC 30063358 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || |||||||| | | || |||||||| || |||||| Sbjct 30063359 CACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 30063401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774920801360