Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq30 127 1e-24 seq9 89.7 4e-13 seq29 87.8 1e-12 seq32 82.4 5e-11 >seq30 Length=120421639 Score = 127 bits (140), Expect = 1e-24 Identities = 278/415 (67%), Gaps = 15/415 (4%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | || ||||| |||||||| || |||||||||| Sbjct 3353507 TGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGC 3353566 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| || || | ||||| || || |||| ||| | || | Sbjct 3353567 TAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATG 3353626 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGC--AAACAAACCGTG 22925 ||||||| |||||||||||||| || || ||||| | | | | | | | || | | Sbjct 3353627 AAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTTCAGTACAAGCCTTCAGAAGACAGAG 3353686 Query 22926 TCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCA 22985 | ||| ||||||| ||||||| ||| | |||||| || || || Sbjct 3353687 TGAGG-----------GAAATCATTGCTGATGCTGTTCAAATTGAGCAGGAGTTTTTAAC 3353735 Query 22986 AGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACA 23045 ||| || | ||| |||| ||||| ||| | || || |||||| | Sbjct 3353736 AGAAGCCTTGCCTGTTGGCCTCATTGGAATGAACTGTGTTTTGACGAAACAGTACATTGA 3353795 Query 23046 GTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAA 23105 |||||| || || | | || | | || || | ||||||| | | | | | || Sbjct 3353796 GTTTGTAGCTGACAGATTACTTGTAGAACTTGGATTCTCAAAGATTTTTCAGGCAGAAAA 3353855 Query 23106 TCCATTTGATTTCATGGATAACATTAGCATT-GAAGGTAAAACAAACTTCTTTGA 23159 ||| |||||||| ||||| |||||| |||| ||||| |||||||| |||||||| Sbjct 3353856 TCCCTTTGATTTTATGGAGAACATT-TCATTAGAAGGGAAAACAAATTTCTTTGA 3353909 >seq9 Length=156508116 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTT-CTGGGTCATTTGCGGCCATATTCTGG 22806 |||||||||| || || ||| || | |||| |||| || ||||| | ||||||||| Sbjct 73422638 TGGCCTTTGCTGCGGTAGAACCAATCTTCTTTTTCTGGTTCTTTTGCACCGATATTCTGG 73422579 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || ||||||| || |||| || | | |||||||| ||| | |||||| | ||| Sbjct 73422578 CTCAAGAAACAGGGACTGGTGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGAC 73422519 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || ||| ||||||| ||||||| | || |||| | ||| ||| | |||| || Sbjct 73422518 GAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAGCACCTGGTATACAAGCC 73422463 >seq29 Length=120129022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || ||||| || | ||||| || || ||||| | |||||||||| Sbjct 24711681 TGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGC 24711740 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| ||| ||||| || | | |||||||| ||| | |||||| | |||| Sbjct 24711741 TCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACG 24711800 Query 22868 A 22868 | Sbjct 24711801 A 24711801 >seq32 Length=104043685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | | || ||||| |||||||| || |||||||||| Sbjct 37937337 TGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 37937278 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| || || | ||||| || || |||| ||| | || | Sbjct 37937277 TAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATG 37937218 Query 22868 AAG 22870 ||| Sbjct 37937217 AAG 37937215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232701289421