Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq30 329 5e-85 seq23 266 5e-66 seq9 253 3e-62 seq29 129 8e-25 seq28 125 1e-23 >seq30 Length=120421639 Score = 329 bits (364), Expect = 5e-85 Identities = 608/891 (68%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| ||| | | | | || || ||| || ||||| || || ||||| ||||| ||||| Sbjct 3353946 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 3353887 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 ||||| || || ||||| |||||||| ||||| | | | |||| ||| ||||| Sbjct 3353886 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 3353827 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | ||| || ||||| || || ||||| || || || |||| ||| |||| || Sbjct 3353826 AAGTTCTACAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTT 3353767 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 |||||| || || ||| || | || | || | ||| || || ||||| || || Sbjct 3353766 CATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGC 3353707 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 49955 ||| | || || || || | ||||| || | || | || |||||| Sbjct 3353706 ATCAGCAATGATTTCCCTCACTCTGTCTTC------TGAAGGCTTGTACTG---AAACAT 3353656 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || || || || ||||| ||||| || || || || || ||||| || ||||| || Sbjct 3353655 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 3353596 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||||| ||||| ||||| | ||| || ||||| ||||| | |||||||| ||||| || Sbjct 3353595 CAGTCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 3353536 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTC 50132 | | |||||||| || || |||||||| || | ||| || ||| || | | || || Sbjct 3353535 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 3353476 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||| ||||| | || || || || || ||| | ||||| ||||| || || Sbjct 3353475 TGCTATCCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 3353416 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| | | | | ||| || |||| | | ||||| || || | | ||| || Sbjct 3353415 GTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTA 3353356 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || |||| || || ||| |||||||| || ||||| || || ||| | Sbjct 3353355 CATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGG 3353296 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 || ||| || || || ||| || || | || |||||||| || ||||| |||||||| Sbjct 3353295 AACCTGGACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGC 3353236 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||||||| || || | || ||||||| || |||| || | | || || ||||| Sbjct 3353235 TGCAAAAAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCA 3353176 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 | | || | || || | || || ||||| ||||||| || |||||| ||| | Sbjct 3353175 GTGAGGGAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTG 3353116 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 |||||||| ||||||| ||| |||| |||||||| || || ||||| || Sbjct 3353115 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 203 bits (224), Expect = 5e-47 Identities = 216/283 (76%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| || || || || ||||| | |||||||||||| ||||| || || Sbjct 12680223 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 12680164 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| || || || ||||| || || || || || ||||| ||||| || ||||| Sbjct 12680163 TTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAA 12680104 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-ACT 50123 || || |||||||||||||||||||| ||||||||||| |||| ||| |||||||| | Sbjct 12680103 GAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCA 12680044 Query 50124 GGCGC--TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | | |||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 12680043 GCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATA 12679984 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 50224 ||||| || ||||| |||||||| | | |||| || ||||| Sbjct 12679983 GTTTCAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTT 12679941 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCT-TCTTGA--GACATAACTCCCATTTT 49670 ||| |||||| |||| | | |||| ||| ||| || | ||||| |||||||| | Sbjct 12679743 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAAATCGACATGACTCCCATCCT 12679802 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 12679803 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 12679862 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 49777 |||||| ||||||||||| || | |||| || ||||| |||| Sbjct 12679863 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCA 12679909 >seq23 Length=145441459 Score = 266 bits (294), Expect = 5e-66 Identities = 598/895 (67%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || || || || || | || || || || | ||||||||| Sbjct 104692341 GACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCT 104692400 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || | ||| ||||||||| |||| ||||| ||||| || | |||| || |||| Sbjct 104692401 TCTAGTGAAATATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACA 104692460 Query 49774 CCCAATTCA---GAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCA 49830 |||| || | || | || || || | |||||| || || ||||||| Sbjct 104692461 CCCAGCTCCAGTGGAAGC---CTGTCAGCCAAAAATTCAATGTACTGCTTCATCAAAGTG 104692517 Query 49831 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 49890 ||||| || | || || || || | |||| | | ||||| || || | || Sbjct 104692518 CAATTTGCCCCGAAGAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTATCCTA 104692577 Query 49891 ACCGCATCTGT-TATAATAGATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTT 49948 || | | || | | ||| | | || ||| || || | | | | || | | || | Sbjct 104692578 ACAGTGTTGGTGTTTTATATCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCAGGTGCT 104692636 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | ||||||| || || | || ||||| | ||||| |||||| ||||| || || |||| Sbjct 104692637 TGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCATTGG 104692696 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 ||| || || || ||||| || | || || || ||||| ||||| || ||||| Sbjct 104692697 AAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA----- 104692751 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--- 50125 ||||| |||||| || | |||||||| |||| || |||||||| || Sbjct 104692752 -------GAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGGGGACT 104692804 Query 50126 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 | |||| |||| ||||| || |||||||| || ||||||||||| |||| Sbjct 104692805 CTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTT 104692864 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 || ||||| |||||||| | | |||| || |||||||| ||||| || || | Sbjct 104692865 AAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGG 104692924 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 |||| |||||||| || || |||||||| ||||| || | || || |||||||| | | Sbjct 104692925 GACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGG 104692984 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 |||| |||| || |||||| | |||||| || | || |||||||| ||||| || | Sbjct 104692985 CCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCAT 104693044 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 |||| ||| |||| || |||| || || |||||||| | | || | || | || Sbjct 104693045 CACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGTTTCAGAG 104693104 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | ||| | | ||| | || || | || || || | | |||||||| || |||| Sbjct 104693105 CTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAAAGGAGGCCT 104693164 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | || || || ||||| | |||||| |||| |||| || || || | |||||| Sbjct 104693165 CAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAACAAA 104693219 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 102463783 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 102463724 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| || |||||||| || || ||||| || || | | |||| Sbjct 102463723 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 102463664 Query 79180 CTATTTCTAAGACCGTA 79196 || || || | ||| || Sbjct 102463663 CTGTTCCTTATACCATA 102463647 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||||| |||||| || || || | ||||| || Sbjct 102460826 TACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGGGCTCCATAG 102460767 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || |||||| |||| ||||| || || Sbjct 102460766 TAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCAAAGGGGTAT 102460707 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || |||||||| ||||| || ||||| || || || | ||| | Sbjct 102460706 CTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 102460647 Query 79480 TTATTAGA 79487 ||||| || Sbjct 102460646 TTATTTGA 102460639 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| || | || || || |||||||| | Sbjct 102467061 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 102467002 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || ||||||||||| || || || || || ||||| || | | |||| Sbjct 102467001 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 102466942 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 102466941 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 102466891 >seq9 Length=156508116 Score = 253 bits (280), Expect = 3e-62 Identities = 593/885 (67%), Gaps = 20/885 (2%) Strand=Plus/Plus Query 49655 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTT 49714 |||| |||||||| || || ||||| || || || || || || || || ||||||| Sbjct 73422188 ACATGACTCCCATCCACTGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTT 73422247 Query 49715 CCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATC 49774 | ||||| |||||||||||||| ||||| || || || | |||| || ||||| | Sbjct 73422248 CTAATGAAATATTTTCCATGAAGTCAAATGGGTTTCCTACTCTGAAAATCTTGTTAAAAC 73422307 Query 49775 CCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| || || | |||| || |||||||| || || ||||||| || | Sbjct 73422308 CCAGCTCCAGCATAAGCCTATTGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGT 73422367 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 | || | || || | || || | ||| | | || | | || || || | | Sbjct 73422368 TTATCTCGATCAGCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCTAAACT 73422427 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAA---TGTTTAA 49951 | | | || || | | || | ||| | ||| ||| | ||| || || | Sbjct 73422428 CGTTGGCGATTATTTCTTTTAC--TCTCTGCT-TCGTTGGCTTGTATACCAGGTGCTTGA 73422484 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||| | | || || ||||| | |||||||||||| ||||| || || ||||||| Sbjct 73422485 ACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAA 73422544 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || |||| || || | || || ||||| ||||| | ||||| || |||| Sbjct 73422545 ATGTAAGGCCCGGCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAG 73422604 Query 50072 -AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 ||||||||||| |||||| || |||||||| |||| || ||| ||| | | | Sbjct 73422605 AAAAAGAAGATTGGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCT 73422664 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| |||| | ||||| || ||||||| ||| |||||| ||||| Sbjct 73422665 TTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CAC-AGGCATTGTTTCA 73422717 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || ||||| || ||||| | |||||| || |||||||| ||||| || || | ||| Sbjct 73422718 ATAGCATTGAAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGA 73422777 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||| || || ||| ||| || | | || || || || ||||| | |||| Sbjct 73422778 CTGTACATTTTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATA-AAACAGCCAGCC 73422836 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || |||| || |||||| | |||||| || | || ||| |||| | ||| || ||| Sbjct 73422837 TCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCA 73422896 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || || |||| || |||| || || |||||||||| | || | |||| | || Sbjct 73422897 CTCCCTACAAAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAG-AGC 73422955 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 |||| | |||| || || || | || || || || | |||||||| | ||||| Sbjct 73422956 TTCCCAGTGCTGATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCA 73423015 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 50532 || || || ||||| | |||||| ||||| || | || ||||||| Sbjct 73423016 GCTTTCTTGTACATCTGCCAGATATCATGGTACTAGA-TGGGAAA 73423059 >seq29 Length=120129022 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || |||||||||||||||||||| |||||||||| Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 50102 CAACAA 50107 | |||| Sbjct 24711683 CCACAA 24711678 >seq28 Length=122082543 Score = 125 bits (138), Expect = 1e-23 Identities = 239/347 (69%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 183108 TTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGATAATAATACACA-CAAAGT 183166 ||||| ||||| ||||| ||||||||||||||||| | ||| || || || |||| | Sbjct 83187207 TTTGCAAACACTGATGGGGGATATTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATT 83187266 Query 183167 AGTTGGATTCACGGTGGGTCAAGA-CTACCTCAAACTGGTAGAGAGTGATATAGAAAAGT 183225 | | | || | | | | |||| | | ||| || |||||||||| |||||||||| Sbjct 83187267 ATTGGTTTTGAAGCAGAG--AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT 83187324 Query 183226 ATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCGT 183285 ||| || || | ||| || ||||||||| |||| ||| | ||||||||| ||| Sbjct 83187325 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACACGT 83187384 Query 183286 GTCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGCTA 183345 | ||||||| | ||| | ||| | || | || | |||| |||||||| | Sbjct 83187385 GCAAATTCATCGAAGTGCACAAATCCGGAG------CTGTGTGTGCATATGTGTGCGCGA 83187438 Query 183346 TCAAAGTGGAAAGATGCTGCTGTGCCGTGTT---TGCAGATTGGCCAGAATCATGGTACA 183402 ||| |||||| | | ||||||||| ||||| |||||| ||| || || ||| || Sbjct 83187439 TCAGAGTGGAGAAGTTCTGCTGTGCAGTGTTCGCTGCAGA---GCCTGAGTCCTGGCACG 83187495 Query 183403 TGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGTG 183449 |||| | | || |||||| || | | |||| ||||||||| Sbjct 83187496 TGGA---AGGCAGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTG 83187539 Score = 116 bits (128), Expect = 5e-21 Identities = 237/347 (68%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 183108 TTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGATAATAATACACA-CAAAGT 183166 ||||| ||||| ||||| |||| |||||||||||| | ||| || || || |||| | Sbjct 83213256 TTTGCAAACACTGATGGGGGATTTTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATT 83213315 Query 183167 AGTTGGATTCACGGTGGGTCAAGA-CTACCTCAAACTGGTAGAGAGTGATATAGAAAAGT 183225 | | | || | | | | |||| | | ||| || |||||||||| |||||||||| Sbjct 83213316 ATTGGTTTTGAAGCAGAG--AAGAGCAATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT 83213373 Query 183226 ATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCGT 183285 ||| || || | ||| || ||||||| | |||| ||| | ||||||||| ||| Sbjct 83213374 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGGGGAGAAGGAGAAGATCAAGTACACGT 83213433 Query 183286 GTCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGCTA 183345 | ||||||| | ||| ||| | || | || | |||| ||||| || Sbjct 83213434 GCAAATTCATCGAAGTGCGCAAATCCGGAG------CTGTGTGTGCATATGTGTGTGCGC 83213487 Query 183346 TCAAAGTGGAAAGATGCTGCTGTGCCGTGTT---TGCAGATTGGCCAGAATCATGGTACA 183402 ||| |||||| || | ||||||||| ||||| |||||| ||| || || ||| || Sbjct 83213488 TCAGAGTGGAGAGGTTCTGCTGTGCAGTGTTCGCTGCAGA---GCCCGAGTCCTGGCACG 83213544 Query 183403 TGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGTG 183449 |||| |||| || |||||| || | | |||| ||||||||| Sbjct 83213545 TGGA---AGGTGGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTG 83213588 Score = 114 bits (126), Expect = 2e-20 Identities = 238/349 (68%), Gaps = 19/349 (5%) Strand=Plus/Plus Query 183106 CTTTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGATAATAATACACA-CAAA 183164 ||||||| ||||||||||| |||| |||||||||||| | ||| || || || |||| Sbjct 83069969 CTTTTGCAAACACGGATGGGGGATTTTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAA 83070028 Query 183165 GTAGTTGGATTCACGGTGGGTCAAGA-CTACCTCAAACTGGTAGAGAGTGATATAGAAAA 183223 || | | || | | | | |||| | | ||| || |||||||||| |||||||| Sbjct 83070029 TTATTGGTTTTGAAGCAGAG--AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAA 83070086 Query 183224 GTATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGC 183283 | | ||| || | ||| || ||||||||| |||| ||| | ||||||||| | Sbjct 83070087 GCACATCCGGCAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACAC 83070146 Query 183284 GTGTCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGC 183343 ||| ||||||| | ||| | ||| | || | || | |||| ||||| || Sbjct 83070147 GTGCAAATTCATCGAAGTGCACAAATCCGGAG------CTGTGTGTGCATATGTGTGTGC 83070200 Query 183344 TATCAAAGTGGAAAGATGCTGCTGTGCCGTGTT---TGCAGATTGGCCAGAATCATGGTA 183400 ||| |||||| |||| ||||||||| || || |||||| ||| || || ||| | Sbjct 83070201 GCTCAGAGTGGAGAGATTCTGCTGTGCAGTATTCGCTGCAGA---GCCCGAGTCCTGGCA 83070257 Query 183401 CATGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGTG 183449 |||| | || || |||||| || | | |||| ||||||||| Sbjct 83070258 TGTGGA---AGGCGGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTG 83070303 Score = 107 bits (118), Expect = 3e-18 Identities = 238/352 (68%), Gaps = 29/352 (8%) Strand=Plus/Plus Query 183108 TTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGATAATAATACACA-CAAAGT 183166 ||| | ||||| ||||| ||||||||||||||||| | ||| || || || |||| | Sbjct 83254959 TTTTCAAACACTGATGGGGGATATTTGTTCATTGGCTTGGATGGCAAAACCCAGCAAATT 83255018 Query 183167 AGTTGGATT-----CACGGTGGGTCAAGA-CTACCTCAAACTGGTAGAGAGTGATATAGA 183220 | |||| || ||| | |||| | | ||| || |||||||||| ||||| Sbjct 83255019 A-TTGGTTTTGAAGCACAG------AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGA 83255071 Query 183221 AAAGTATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTA 183280 ||||| ||| || || | ||| || ||||||| |||||| ||| | || || || Sbjct 83255072 AAAGTGCATCCAACAGCTGCCTGTCACTCACTTCTGTGGGAAGAAGGAGAAGATAAAATA 83255131 Query 183281 CGCGTGTCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTG 183340 | | || |||||| | ||| | ||| | || | || | |||| ||||| Sbjct 83255132 CACATGCAAATTCATTGAAGTGCACAAATCCGGAG------CTGTGTGTGCATATGTGTG 83255185 Query 183341 CGCTATCAAAGTGGAAAGATGCTGCTGTGCCGTGTT---TGCAGATTGGCCAGAATCATG 183397 ||| ||| |||||| |||| ||||||||| ||||| |||||| ||| || || || Sbjct 83255186 CGCGCTCAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGA---GCCCGAGTCCTG 83255242 Query 183398 GTACATGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGTG 183449 | || |||| | || || |||||| || | | |||| ||||||||| Sbjct 83255243 GCACGTGGA---AGGCGGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTG 83255291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266941479480