Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30 300 2e-76 seq9 188 7e-43 seq23 170 2e-37 seq32 102 8e-17 seq29 102 8e-17 >seq30 Length=120421639 Score = 300 bits (332), Expect = 2e-76 Identities = 584/851 (69%), Gaps = 21/851 (2%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 3353930 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 3353871 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 13702 ||||||||||| |||||| || | ||| | || | | || || ||||||| ||||| Sbjct 3353870 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTACAAGTAA 3353812 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| ||||| | ||||||||| || || | | ||| |||| ||||| || || || Sbjct 3353811 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCC 3353752 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | |||||||| || | || || ||||| || || || Sbjct 3353751 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 3353692 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | | || | ||||| || || | ||| || | || ||||| || Sbjct 3353691 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 3353641 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| ||||| || ||||| || || || ||||| |||||||| || | ||| ||||| | Sbjct 3353640 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAG 3353581 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 |||| || |||| ||| ||||||||||||||||| || || ||| | ||||| || || Sbjct 3353580 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 3353521 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | || ||| ||||| | | ||| | | | |||||| Sbjct 3353520 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 3353461 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT- 14121 |||| | || | |||||| |||| | | |||||||||||| || ||||||||| ||| Sbjct 3353460 AGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 3353401 Query 14122 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 3353400 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 3353343 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTT 14238 | || || || |||||||| ||||| ||||| || |||| ||| || || | Sbjct 3353342 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACC--TGGACCT 3353285 Query 14239 CC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || || ||||| | || |||| |||||||| || || |||||||| ||||||||||| Sbjct 3353284 CCTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAG 3353226 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA 14357 || || |||| ||||| || | ||| || || || || ||||| | | | Sbjct 3353225 GCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGG 3353166 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 | ||| || | || || || || ||||||| ||| || |||| ||||||||| Sbjct 3353165 TTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATT 3353106 Query 14418 ACCCATATTTC 14428 ||| || || Sbjct 3353105 CTCCAGATATC 3353095 Score = 152 bits (168), Expect = 5e-32 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 12680226 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 12680167 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||||||| | || ||||||| ||| ||||| || | ||| ||||||| ||| Sbjct 12680166 TCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCA 12680107 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || ||||||||||| ||||| || || || ||||| || | | || ||||||| || Sbjct 12680106 AAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATAC 12680047 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | || | ||||| | ||||| ||||| |||| || || || | | || | Sbjct 12680046 GCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 12679987 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTC 14122 || |||||||||||||| || | |||||| Sbjct 12679986 ATAGTTTCAATAGCATTGAAGAGATATTC 12679958 >seq9 Length=156508116 Score = 188 bits (208), Expect = 7e-43 Identities = 390/576 (68%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| || || || | ||||| ||||| |||||||| || || |||||||| | || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA-GAATATT 13994 ||| || ||| |||| || | ||| ||||| | ||||| || || ||||| ||| ||| Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || |||||||| || | | ||||||| || | |||| ||||| | || Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCAGTC 73422676 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || | ||||| |||| || | | | |||||||||||||||||| || Sbjct 73422677 CAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATAGCATTGAAA 73422729 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | |||||| || ||||| | | | |||||| || |||||||| | || ||||||| | Sbjct 73422730 AGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTA 73422789 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 ||||||||| |||| | | | || || |||||||| || | ||| || | ||| Sbjct 73422790 GAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTTGA 73422848 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| | ||||| || |||| ||| |||| | ||| |||||||| || |||| Sbjct 73422849 ACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAG 73422908 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGA 14353 || |||| | || ||||| | | ||| || || || || ||| | | || Sbjct 73422909 AAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTTCCCAGTGCTGA 73422968 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||||| ||||| || || || ||| | |||||||| | || ||||||| || || Sbjct 73422969 T--CTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTA 73423026 Query 14414 CATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 ||| ||| || || | || | || ||||| || Sbjct 73423027 CATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 73423062 >seq23 Length=145441459 Score = 170 bits (188), Expect = 2e-37 Identities = 400/604 (66%), Gaps = 16/604 (3%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||| | || || || | |||| ||||| |||||||| Sbjct 104692630 AGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGC 104692689 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||| ||| | || ||||||| || || || || | ||| ||||| | ||| Sbjct 104692690 TCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCA 104692749 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || ||| | ||| || || ||||||| || | | || ||||||| | Sbjct 104692750 AA------------GAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATAT 104692797 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | | | ||||| | |||| ||||| |||| || || || | | || | Sbjct 104692798 GGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14153 ||||||| ||||||||| || | |||||| | || || | | | |||||| || ||| Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||| || |||||||||||||||||||||||||| || || | || ||||| || Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 14214 CATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273 || | || || | ||| ||||| | ||||| || |||| |||||||| ||| Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 14274 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14333 || |||||||| ||| |||| || |||| | || ||||| ||| ||| || Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 14334 TTGAGTTTTTTCCAATCGGATAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14391 || || || ||| | | | ||| |||| ||||| || || || | | ||||||| Sbjct 104693098 TTCAGAGCTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAA 104693155 Query 14392 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14451 | || ||||||| || ||||| ||| || || | ||| || ||||| || | Sbjct 104693156 AGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAA 104693215 Query 14452 CAAA 14455 |||| Sbjct 104693216 CAAA 104693219 >seq32 Length=104043685 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 37937217 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 37937276 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||||||||||||||| || || ||||| ||||| || || |||||||| || Sbjct 37937277 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 37937335 >seq29 Length=120129022 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| ||||| || || || ||||| | Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 24711683 CCACAACGCGTTCTCC 24711668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726758703800