Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq30 298 5e-76 seq23 158 1e-33 seq32 102 8e-17 seq29 96.9 3e-15 >seq30 Length=120421639 Score = 298 bits (330), Expect = 5e-76 Identities = 602/881 (68%), Gaps = 19/881 (2%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| ||| ||||| ||| ||||| || || ||||| ||||| | ||| || || ||| Sbjct 3353930 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 3353871 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAA 13490 |||||||| || |||||| || | ||| | || | | || || ||||||| | ||| Sbjct 3353870 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTACAAGTAA 3353812 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||| | ||||||||| || || | | ||| |||| ||||| || || || Sbjct 3353811 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCC 3353752 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | |||||||| || | || || ||||| || || || Sbjct 3353751 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 3353692 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 | | | |||| | ||||| || || | ||| || | || ||||| || Sbjct 3353691 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 3353641 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| ||||| || ||||| || || || ||||| |||||||| || | ||| ||||| | Sbjct 3353640 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAG 3353581 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 |||| || |||| ||| ||||||||||| |||||||| || ||| | ||||| || || Sbjct 3353580 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 3353521 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || | | || ||| ||||| | | ||| | | || |||||| Sbjct 3353520 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 3353461 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT- 13909 |||| | || | |||||| |||| | | ||||||||| ||||| || |||||| || Sbjct 3353460 AGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 3353401 Query 13910 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 3353400 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 3353343 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG-CTTCTGACCATTGTACCTC 14027 | || || || |||||||| ||||| || || || || | || | || ||||| Sbjct 3353342 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC-CTGGACCTC 3353284 Query 14028 C-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | || ||||| | || ||||||||||||| ||||| |||||||| ||||||||||| | Sbjct 3353283 CTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGG 3353225 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAAT 14146 | || |||| ||||| || | ||| || || || || ||||| | | | | Sbjct 3353224 CTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGT 3353165 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14206 ||| || | || || || || ||||||| ||| || |||| ||||||||| Sbjct 3353164 TCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATTC 3353105 Query 14207 CCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 ||| || || ||| || ||||| | ||||| ||| Sbjct 3353104 TCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCTT 3353064 Score = 134 bits (148), Expect = 1e-26 Identities = 191/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 12680226 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 12680167 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| | || ||||||| ||| ||||| || | ||| ||||||| || Sbjct 12680166 TCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCA 12680107 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||||||||||| ||||| || || || ||||| || | | || ||||||| || Sbjct 12680106 AAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATAC 12680047 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| ||||| ||||| |||| || || || | | || | Sbjct 12680046 GCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 12679987 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTC 13910 || ||||| || |||||||| | || ||| Sbjct 12679986 ATAGTTTCAATAGCATTGAAGAGATATTC 12679958 >seq23 Length=145441459 Score = 158 bits (174), Expect = 1e-33 Identities = 397/604 (66%), Gaps = 16/604 (3%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||| | || || || | |||| ||||| |||||||| Sbjct 104692630 AGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGC 104692689 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||| ||| | || ||||||| || || || || | ||| ||||| | || Sbjct 104692690 TCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC- 104692748 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 |||||| | ||| || || ||||||| || | | || ||||||| | Sbjct 104692749 -----------AAAGAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATAT 104692797 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | | | ||||| |||| ||||| |||| || || || | | || | Sbjct 104692798 GGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 ||||||| || |||||||| | || ||| | || || | | | |||||| || ||| Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCA 104692917 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| || ||||||||||||||||||||||| || || || | || ||||| ||| Sbjct 104692918 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAA 104692977 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | || |||| ||| || || | ||||| || ||||||||||||| || Sbjct 104692978 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 104693037 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 || |||||||| ||| |||| || |||| | || ||||| ||| ||| || Sbjct 104693038 ATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGT 104693097 Query 14122 TTGAGTTTTTTCCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14179 || || || ||| | | | ||| |||| ||||| || || || | | ||||||| Sbjct 104693098 TTCAGAGCTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAA 104693155 Query 14180 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14239 | || ||||||| || ||||| ||| || || | ||| || ||||| || | Sbjct 104693156 AGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAA 104693215 Query 14240 CAAA 14243 |||| Sbjct 104693216 CAAA 104693219 >seq32 Length=104043685 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 37937217 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 37937276 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 37937277 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 37937335 >seq29 Length=120129022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| ||||| || || || ||||| | Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 24711683 CCACAACGCGTTCTCC 24711668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587561651480