Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 122 1e-22 seq30 118 2e-21 >seq23 Length=145441459 Score = 122 bits (134), Expect = 1e-22 Identities = 377/578 (65%), Gaps = 19/578 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||||| || |||| || ||| | |||||||| || ||| |||||||||||||| Sbjct 104693210 TTTCCCATTGAATACTATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 104693151 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | | | ||||| || || ||||||| | | | ||||| ||| | |||| | Sbjct 104693150 ACTGCCAAGGAGGTGGACCTTTCCAAGGGTATTCAACACTGGGAAGCTC-TGAAACTGGA 104693092 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| || | |||||| | ||| || |||| ||||||| | ||||| || ||| Sbjct 104693091 --TGAGAGATATTTTATAGCTCACGTTCTGGCTTTCTTTGTAGCGAGTGATGGCATAGTC 104693034 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || ||||| |||| |||| | || |||||| || || Sbjct 104693033 AATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA-AGTTACAGAGGCCCGCTGTTT 104692975 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || ||| |||| || || ||| | ||||| ||||||||| | | || ||||| Sbjct 104692974 CTATGGCTTCTAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTATTGA 104692915 Query 125297 CATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || |||||| ||| | ||| | || | | ||||| || || || | || ||| Sbjct 104692914 CACTTACATTAAAGATTC-CAAGGAAAGAGAATATCTCTTCAATGCTATTTAAACAATGC 104692856 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || |||||| | |||| | || |||| | ||| | |||| | | Sbjct 104692855 CTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGTTGGACTGGGGACAAAGAGTCCCCAT 104692796 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || || | ||||| || || | || || || ||||| |||| Sbjct 104692795 ATGGAGAATGAGTTGTGGCCTTTGCTGTGGTGGAAGGAGTCTTC------------TTTG 104692748 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| ||| |||| ||||| || || || | || ||| Sbjct 104692747 CATCGATATTCTGGCTCAAGAATCGCAGACTGATGCCGGGTCTTACACTTTCCAATGAGC 104692688 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| ||||| |||| ||||||| |||| |||| Sbjct 104692687 TTATTAGCAGAGACAAGGGTTTACACTGGGACTCTGCC 104692650 >seq30 Length=120421639 Score = 118 bits (130), Expect = 2e-21 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| || || || || || |||| | | | || |||||| | |||| | || Sbjct 12679964 CTCTTCAATGCTATTGAAACTATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGC 12680023 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | || || |||| | || ||| | ||||| || ||||||||||| Sbjct 12680024 TGGATTGGGGACAAAGAGGCTGCGTATGGAGAAAGAGTTGTGGCCTTTGCCGCCGTAGAA 12680083 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || ||||||||||| ||| |||||| | || || ||||||||||| || ||||| ||| Sbjct 12680084 GGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTGTGGCTCAAGAAACGGGGACTGATG 12680143 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || || || || ||| |||| |||||||||| ||||||| |||||| Sbjct 12680144 CCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTTT 12680203 Query 125571 GCC 125573 ||| Sbjct 12680204 GCC 12680206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057282509320