Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq30 325 3e-84 seq23 228 7e-55 seq32 96.9 3e-15 >seq30 Length=120421639 Score = 325 bits (360), Expect = 3e-84 Identities = 586/848 (69%), Gaps = 15/848 (2%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| || ||| Sbjct 3353930 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 3353871 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAA-TTCTAGTAACAA 12981 |||||||| || ||||||| | | | || ||| | | | || ||||| | || Sbjct 3353870 ATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTACAAGTAA 3353812 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| |||||||| |||||||||||| | ||| ||||||||||||| || | Sbjct 3353811 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCC 3353752 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| |||||||||||||| | | || || | ||| || || || || || Sbjct 3353751 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 3353692 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 || | | || ||| | || ||| | || |||||||| || ||||| || Sbjct 3353691 CCTCACTCTGTCTTCTGAAGGC----TTG-----TACTGAAACATCAGGCAGGCAAAGTC 3353641 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| | |||||||| || || || || || |||||||| || || || ||||| || Sbjct 3353640 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAG 3353581 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||| || || | ||| ||||| |||||||| || || || || | |||||||| || Sbjct 3353580 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 3353521 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACTTTC 13340 || ||||| || | || ||||| ||| | ||| || || ||| ||||||| Sbjct 3353520 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTA-TCTGCTATCCAGCGCA 3353462 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 ||| ||| |||||||| ||||| | ||| |||| ||||||||||||||| | | Sbjct 3353461 GAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATT 3353402 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||| ||| ||| || ||||| ||||| | ||| || ||||| ||||| |||| Sbjct 3353401 CCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAA 3353342 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT-GAACTTCG 13519 ||| || || || || || ||||| || || || ||| | |||| || || | Sbjct 3353341 CATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGGACCTCCT 3353282 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 || ||||| | || | |||||||| || || || || ||||| || |||||||| || Sbjct 3353281 GACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCT 3353223 Query 13580 AGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | ||||| ||||| | || |||| | | ||| ||| | || | | Sbjct 3353222 AAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTTC 3353163 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 ||||| || || ||||| || | ||||| ||||| || || | ||||||||| || Sbjct 3353162 TTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATTCTC 3353103 Query 13700 CATATATC 13707 || ||||| Sbjct 3353102 CAGATATC 3353095 >seq23 Length=145441459 Score = 228 bits (252), Expect = 7e-55 Identities = 601/907 (66%), Gaps = 43/907 (5%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || ||| | ||||| |||| ||| || ||||| |||| |||||| Sbjct 104692337 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTT 104692396 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATT 12956 |||||||| |||||||||||| | || || || ||||||| || | || | || Sbjct 104692397 TCCTTCTAGTGAAATATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAAAA---TCTT 104692453 Query 12957 TTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTA 13016 || |||||| | || ||| | |||||||| | ||| || |||||||| ||||| | Sbjct 104692454 CTTAACACCC-AGCTCCAGTGGAAGCCTGTCAGCCAAAAATTCAATGTACTGCTTCATCA 104692512 Query 13017 AATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA 13076 || || || || | | || ||||||| ||| || | | ||| | | ||| Sbjct 104692513 AAGTGCAATTTGCCCCGAAGAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTA 104692572 Query 13077 TATCAACTG-CTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 | ||| | || | ||| ||| ||| | | ||| ||||| | | || Sbjct 104692573 TCCTAACAGTGTTGGTGTTTTATATCTTTTACTCTTTGCTCCAATGGCTTGTGTACCAGG 104692632 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 ||||| ||||||| || ||| | || ||||| || || | ||||| || || ||||| Sbjct 104692633 TGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCA 104692692 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 || |||| ||| ||||||||||| || | || || || | ||| ||||| | Sbjct 104692693 TTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATAT---------C 104692743 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATA--C 13312 || | ||| || | |||||| || | ||||| || | |||| | ||| ||||| Sbjct 104692744 GA---TGCAAAGAAGACTCCTTCCACCACAGCAAAGGCCA-CAACTCATTCTCCATATGG 104692799 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | ||| ||| | | | |||| |||||||| || || | || || || | Sbjct 104692800 GGACTCTTTGT--CCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 104692857 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 || ||| || || || || | ||| | | ||||||| ||| ||| |||| | Sbjct 104692858 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAG----T 104692913 Query 13433 ATCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 |||||||| || |||||||| || || || |||||||| || |||| ||| ||||| Sbjct 104692914 GTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATA 104692973 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 ||||| | ||||||| || |||||||| | ||||| || | |||||||| || Sbjct 104692974 GAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATT 104693033 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGT- 13607 ||||| || ||||| || |||| ||||| || | ||| ||||| | | | || | Sbjct 104693034 GACTATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATC 104693093 Query 13608 ---TTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGG 13664 |||| | | ||| ||| | | ||| | | || || | || ||||||| | | Sbjct 104693094 CAGTTTC--AGAGCTT--CCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAG 104693149 Query 13665 TCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAA 13724 ||||||| || || |||| ||||| |||||| ||| ||||| | || ||||||||| Sbjct 104693150 TCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAA 104693209 Query 13725 ACACAAC 13731 | ||||| Sbjct 104693210 AGACAAC 104693216 >seq32 Length=104043685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| ||||||||||||| || | Sbjct 37929063 AATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 37929122 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 37929123 CCAACAGGCAAGGCTTCTGTTAAAAA 37929148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981312712214