Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=195471971 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||||| | || || ||||| ||||| ||||| | ||| || ||| Sbjct 131021329 GGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGTAGAAGTGATG 131021388 Query 127222 CCACAGGCAGAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAG 127281 || |||||||| || || || || || || || || || | |||||||||||||| ||| Sbjct 131021389 CCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGTGAGAAG 131021448 Query 127282 CTGAAGACATTGAGACTTCGACTGCGTCGCTG 127313 |||||||| | || | || ||| | ||||| Sbjct 131021449 CTGAAGACCCTCAGGATGCGGCTGAGGCGCTG 131021480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430053315053384