Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq27 223 2e-53 seq16 87.8 1e-12 >seq27 Length=130694993 Score = 223 bits (246), Expect = 2e-53 Identities = 391/567 (69%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 |||||| | |||||||| |||| |||| |||||| | || || ||||||| | ||||| Sbjct 87967635 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGG 87967576 Query 25473 ACAAACTCTCCCGGTT--------CT--AGCCCGGTAACGTAAGCCATCATGTACGTGAG 25522 ||||| || || || | || || || || | | || |||||||| ||||| Sbjct 87967575 ACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAG 87967516 Query 25523 GAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGT 25582 |||| |||||||| ||||| ||||| || || | ||||| || || |||||||||| Sbjct 87967515 CAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATATCTCCT-GACCTCTGGT 87967457 Query 25583 AGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAG 25642 | ||||| || || ||||| | | || || |||||||| | || | ||| |||| Sbjct 87967456 AAAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAG 87967397 Query 25643 GAAGA----GCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTG 25698 | || || || ||| | ||||| ||||||||||| |||| |||| | ||| Sbjct 87967396 GCAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACA---TGATTCTTCTG 87967340 Query 25699 TCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCC 25758 || || |||||| |||| || ||||||||||| || || || || Sbjct 87967339 TCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCT 87967280 Query 25759 GAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTAC 25818 ||||| |||| |||||| ||||||||||||| |||| |||||| ||||| || || Sbjct 87967279 GAGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAA 87967220 Query 25819 ACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTG 25878 || || || ||||| || || | | | ||| ||| | |||| |||||||| | Sbjct 87967219 ACTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGG 87967160 Query 25879 GAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 25938 || | ||| || |||||||| | || ||||| ||| | ||||| | |||||||| Sbjct 87967159 GATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGAT 87967100 Query 25939 CCTCTGACGAACCACAGCAGCTCCGCC 25965 || ||| ||||||| || |||| || Sbjct 87967099 CCCTTGATAAACCACAACAACTCCTCC 87967073 >seq16 Length=151834684 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || ||||||||||||| |||| |||||| ||||| || || || || || ||||| Sbjct 30068473 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 30068532 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| ||| |||| ||| |||||||| || Sbjct 30068533 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAATCTCGGGATCCATTGGCATC 30068592 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 30068593 CCAGATTCTCACTCCCTTTGAGGACAATTCTTTAGCATTTGTGGATCC 30068640 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| ||| |||||||| ||||| ||||| || || | ||||| Sbjct 30063255 GCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACGCCCAGACCCATA 30063314 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || || || | | ||| || |||||||| Sbjct 30063315 TCTCCT-GACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACCACATAGAACTGACA 30063373 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 30063374 GAGGGCATGGCAAGGAGGCAGTGCCATCAGG 30063404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136741896611