Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq48 98.7 8e-16 seq26 98.7 8e-16 seq22 98.7 8e-16 seq9 93.3 4e-14 seq33 84.2 2e-11 >seq48 Length=23158 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 14484 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 14543 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | ||||||||| || Sbjct 14544 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 14603 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 14604 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 14663 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || |||||||| |||||||||||| Sbjct 14664 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 14715 >seq26 Length=124595110 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 83409887 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 83409828 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | ||||||||| || Sbjct 83409827 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 83409768 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 83409767 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 83409708 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || |||||||| |||||||||||| Sbjct 83409707 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 83409656 >seq22 Length=149736546 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| |||||||||||||||||| |||| Sbjct 122457131 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 122457072 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | ||||||||| || Sbjct 122457071 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 122457012 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 122457011 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATAGTGTCCGAGGGTTCAAC 122456952 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || |||||||| |||||||||||| Sbjct 122456951 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 122456900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTC 48570 || ||||| | |||||| ||| |||||||||||||||||| | || ||| ||| | | Sbjct 6330008 CTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTTAGACAA-AGTCAGGCC 6330066 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 || |||||||||||||| | | | | | ||||||||| || | | |||||| Sbjct 6330067 ATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 6330126 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 ||| || || ||| | | |||| || || | | || || || || || Sbjct 6330127 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCGTGAT 6330186 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||||| || || || || ||||||||||||||||||||| Sbjct 6330187 GGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 6330226 >seq9 Length=156508116 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| |||| ||||||||||||| |||| ||| || | Sbjct 132148670 CTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCA 132148729 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||||||||||||| | | || | | ||||||||| || | | |||||| Sbjct 132148730 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAAGTCCTTCCTTA 132148789 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| | || ||| | | |||| || || | | || ||||| ||| ||| Sbjct 132148790 TCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATG 132148849 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || || || || |||||||| |||||||||||| Sbjct 132148850 GTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 132148888 >seq33 Length=98207768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT-TGTCGCTC 48570 || ||||| | |||||| ||| |||| ||||||||||||| |||| ||| | | || | Sbjct 16968823 CTCAACACCAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTATGGC-C 16968765 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 || |||||||||||||| | | | | | ||||||||| || | | |||||| Sbjct 16968764 ATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAAGTCCTTCCTT 16968705 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 ||| || || ||| | | ||||||| || | || ||||| || || Sbjct 16968704 ATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTGAT 16968645 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| || || | || || ||||||||||||||||||||| Sbjct 16968644 GGTCTTCCCCATAAGGGTCTTCACAAAAATCTGCATCGTG 16968605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250137262207