Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 9e-13 seq28 84.2 1e-11 seq29 82.4 4e-11 >seq30 Length=120421639 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||| || | |||||| | |||||||||| ||||||| |||||||||||| Sbjct 23438093 TAACAAAAACTCCAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 23438152 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 23438153 CCACGCTCTAACCAACTGAGCTAACCGGCC 23438182 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21855332 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21855391 Query 11528 CC 11529 || Sbjct 21855392 CC 21855393 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21882045 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21882104 Query 11528 CC 11529 || Sbjct 21882105 CC 21882106 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 22029284 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 22029225 Query 11528 CC 11529 || Sbjct 22029224 CC 22029223 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 23309064 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 23309123 Query 11528 CC 11529 || Sbjct 23309124 CC 23309125 >seq28 Length=122082543 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 69037077 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 69037018 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 69037017 CTGAGCTAACCGGCC 69037003 Score = 84.2 bits (92), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11439 TTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| || | || || | |||||| | |||||||||| ||||||| |||||||||| Sbjct 69062302 TTAAAAAGATAAGCACACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 69062361 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 ||| ||||||| |||||||||||||| |||| ||||| Sbjct 69062362 CACCACGCTCTAACCAACTGAGCTAACCGGCCAGAGACGA 69062401 >seq29 Length=120129022 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 110845399 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 110845340 Query 11528 CC 11529 || Sbjct 110845339 CC 110845338 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490540306732