Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7 165 1e-35 seq1 150 3e-31 >seq7 Length=182113224 Score = 165 bits (182), Expect = 1e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||||||| || ||||| ||||||||||||||||| | ||||| |||||| ||| Sbjct 36251215 AAGCCCACGTCACCACCGAACGTGCTGGGTTTCCAGTACTCTGGGGAACAGATGGGATTC 36251156 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||||| ||| | || || || || |||||| Sbjct 36251155 CCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTTTCTCCAAAGATG 36251096 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || ||| |||| || || || | ||| ||||| | ||| |||||||| Sbjct 36251095 GAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAACTCTAAAGCATCGATGTCA 36251036 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | || ||||| || ||||| |||||||| Sbjct 36251035 CCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTGT 36250992 >seq1 Length=195471971 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||||| || |||| ||| || ||||| || | || || Sbjct 150104107 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCACCCCACTCAGGATGCTCCTGCTTGAGT 150104048 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | ||||||||||||||||| |||| |||||||| || || |||||||| ||||||||| Sbjct 150104047 ATGTCGCACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 150103988 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | ||| || || || | | ||||| Sbjct 150103987 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGCAGGTTCTCAGGGATGTGAGGAGGG 150103928 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| |||||||| | ||||||||||| || || |||| Sbjct 150103927 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAAT 150103872 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 150102138 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 150102079 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 150102078 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 150102019 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 150102018 GGTGGACTGTCAATCAAATATGATCTGGCTGAA 150101986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708522966692080