Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 158 2e-34 seq30 152 8e-33 seq22 123 4e-24 >seq8 Length=160039680 Score = 158 bits (174), Expect = 2e-34 Identities = 183/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| || || |||||||| || ||||||||||| || | Sbjct 96263260 CGCCAAGCGCCATCGCAAAG-TCTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCCA 96263202 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || ||||| |||||||| |||| || | |||| || |||| Sbjct 96263201 TCCGCCGCCTGGCTCGGCGCGGTGGGGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 96263142 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 96263141 CCCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCAGTCACCTACACCG 96263082 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| | |||||| | || || || | || || || | Sbjct 96263081 AGCACGCCAAGCGCAAGACCGTCACCGCTATGGATGTGGTGTACGCTCTCAAGCGCCAGG 96263022 Query 16671 GCCG 16674 |||| Sbjct 96263021 GCCG 96263018 >seq30 Length=120421639 Score = 152 bits (168), Expect = 8e-33 Identities = 198/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | ||||| || |||||||| || ||||||||||| || || Sbjct 22041279 CGCCAAGCGCCACCGCAAAGTGCTTCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 22041220 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 22041219 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 22041160 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 22041159 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 22041100 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 22041099 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 22041040 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | || || || || ||||| || || Sbjct 22041039 CCGTACTCTGTACGGGTTCGGCGGTTAAGCTGCT 22041006 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| | || || || |||||||| || ||||||||||| || || Sbjct 23757065 CGCTAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 23757124 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 23757125 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 23757184 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 23757185 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 23757244 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 23757245 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 23757304 Query 16672 CCG 16674 ||| Sbjct 23757305 CCG 23757307 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | ||| || || |||||||| || ||||||||||| || ||| Sbjct 23581647 GCTAAGCGCCACCGCAAAGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 23581706 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 23581707 CGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 23581766 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 23581767 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 23581826 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 23581827 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGGT 23581886 Query 16673 CG 16674 || Sbjct 23581887 CG 23581888 Score = 149 bits (164), Expect = 1e-31 Identities = 203/282 (72%), Gaps = 1/282 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | ||| || ||||||||||| || || |||||||| || || Sbjct 23698405 CGCTAAGCGCCACCGTAAGGTTCTCCGTGATAACATCCAGGGCATTACCAAGCCCGCCAT 23698346 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 23698345 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 23698286 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 23698285 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 23698226 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 23698225 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 23698166 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAAC 16713 ||| | | || || || || ||||||| |||| ||||| Sbjct 23698165 CCGCACTCTCTACGGATTCGGCGGTTAATCGACTAA-CAAAC 23698125 Score = 147 bits (162), Expect = 3e-31 Identities = 197/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||||||||| || || Sbjct 21750461 CGCCAAGCGCCACCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 21750402 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 21750401 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21750342 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 21750341 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 21750282 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 21750281 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21750222 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA-TCTT 16703 ||| | | || || || ||| | ||| |||| Sbjct 21750221 CCGCACCCTCTACGGATTCGGAGGCTAAGTCTT 21750189 Score = 147 bits (162), Expect = 3e-31 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | |||||| ||||||||||| || ||||||||||| || || Sbjct 23551599 CGCTAAGCGCCACCGTAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 23551540 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || || | Sbjct 23551539 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGTCTCATCTACGAGGAAAC 23551480 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 23551479 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 23551420 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 23551419 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 23551360 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 23551359 CCGCACCCTCTACGGATTCGGCGGTTAAGCT 23551329 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||| ||||| || || Sbjct 21811828 CGCCAAGCGCCACCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACGAAGCCCGCCAT 21811887 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 21811888 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21811947 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 21811948 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 21812007 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 21812008 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21812067 Query 16672 CCG 16674 ||| Sbjct 21812068 CCG 21812070 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||| ||||| || || Sbjct 21832114 CGCCAAGCGCCACCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACGAAGCCCGCCAT 21832055 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 21832054 CCGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 21831995 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 21831994 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 21831935 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 21831934 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 21831875 Query 16672 CCG 16674 ||| Sbjct 21831874 CCG 21831872 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | ||| || ||||||||||| || ||||||||||| || || Sbjct 23761113 CGCTAAGCGCCACCGTAAGGTTCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 23761054 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 23761053 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 23760994 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 23760993 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 23760934 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 23760933 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 23760874 Query 16672 CCG 16674 ||| Sbjct 23760873 CCG 23760871 >seq22 Length=149736546 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || || |||||||| ||||| Sbjct 136804335 CGCCAAGCGACACCGCAAGGTTCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTAT 136804276 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 136804275 CCGGCGGTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGAC 136804216 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 136804215 TCGCGGTGTCCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCCGTCACCTACACCGA 136804156 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || | ||||| | || || || | || || || || Sbjct 136804155 GCACGCCAAGCGCAAGACGGTTACGGCTATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 136804096 Query 16672 CCG 16674 ||| Sbjct 136804095 CCG 136804093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075010738451