Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq30 242 4e-59 seq9 120 3e-22 seq23 114 1e-20 seq32 89.7 5e-13 >seq30 Length=120421639 Score = 242 bits (268), Expect = 4e-59 Identities = 624/944 (66%), Gaps = 23/944 (2%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| |||||||| ||| | ||| | | | | | Sbjct 3353992 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCGGTGGTTTCCGCCATGACTGCAAATC 3353933 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 3353932 TCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 3353873 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCA-GTTCTGATAAT 21304 ||||||||||||| |||||||| | | ||| || || | | || ||| ||||| | | Sbjct 3353872 CCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTACAAGT 3353814 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 ||||| || |||||||| || || || || | | || |||| ||||| || || | Sbjct 3353813 AATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGG 3353754 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 ||||| | |||| ||| ||||| | || || || || ||| |||| || Sbjct 3353753 CCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATT 3353694 Query 21425 TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGT--TTAAACATCAAACATGCAA 21482 | | | || | | || || |||| | |||||||| || |||| Sbjct 3353693 TCCCTCACTCTG--TCTTCTGAAGGC---------TTGTACTGAAACATCAGGCAGGCAA 3353645 Query 21483 AATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA 21542 | ||||| || | |||||||||||| || || | |||||| ||||| || | || |||| Sbjct 3353644 AGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCA 3353585 Query 21543 TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCT 21602 | | |||||||| |||| ||| ||||||| ||||||| ||| || ||| |||| || | Sbjct 3353584 TGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTT 3353525 Query 21603 CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATT 21662 | || |||||||| || || | || ||| || | ||||||| |||| |||||| Sbjct 3353524 CCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGC 3353465 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||| | | ||| |||| |||| | | ||||| ||||| || ||||| | Sbjct 3353464 GCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC-GTTAAATAAA 3353406 Query 21723 GAtt--tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 ||| ||||| | | ||| | ||| ||| ||||| || || Sbjct 3353405 AATTCCCTTTTC-TTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGA 3353347 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCT-CTGAACATTGAA 21839 || | ||| || || |||||||| || || || || | || | |||| | || Sbjct 3353346 GTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGGAC 3353287 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | | || ||||| || | |||||||||||||||| |||||||||||||| ||||||| Sbjct 3353286 CTCCTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAA 3353228 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATA 21959 | || || || | |||||||| |||| | | | || ||||| | | Sbjct 3353227 AGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGA 3353168 Query 21960 AATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-AAAGCTAGCAATAGCCTTTTTATAC 22018 | ||||| || || || ||||| |||||| |||| | || || | |||||| Sbjct 3353167 GGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGAT-GCCCGTGCTTGCTTATAC 3353109 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 || ||||||||||| ||| |||||||| || |||||||| Sbjct 3353108 ATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||| ||| || |||||||| || | ||| ||| ||| | ||||| | ||||| Sbjct 12679739 TTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAAATCGACATGACTCCCA 12679798 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | | ||||| || | |||| || || || || |||||||||||||| | ||| ||| Sbjct 12679799 TCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATAT 12679858 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTC 21297 |||||| || ||||| |||||||| | | || || || ||| ||||||| || Sbjct 12679859 TTTCCATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTC 12679913 >seq9 Length=156508116 Score = 120 bits (132), Expect = 3e-22 Identities = 583/920 (63%), Gaps = 25/920 (3%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||| |||||| |||||| | || | || ||| | || | || |||| | ||||| Sbjct 73422141 TTACTTAAAAGTCAGCACCCAAGGTAAACGAATTCT-TTGTGGAATTCACATGACTCCCA 73422199 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | ||||| |||| |||| || || || || |||||||||||||| ||||| ||| Sbjct 73422200 TCCACTGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATAT 73422259 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||| || |||||||| ||| | | | || || || ||| ||||||| || | Sbjct 73422260 TTTCCATGAAGTCAAATGGGTTTCCTACTCTGAAAATCTTGTTAAAACCCAGCTC-CAGC 73422318 Query 21303 ATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 |||| |||| || |||||||| || || || ||| || || || || ||||| Sbjct 73422319 ATAAGCCTATTGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTTATCTCGATC 73422378 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGAT----TTTTCTATAGAGACGGCTTCAAC 21417 | | ||||| | || || | | ||| | ||||| | | | | Sbjct 73422379 AGCATCACAGGCAAGGC----CTCCATGAGGATCCCCTGCTCTATCCTAAACTCGTTGGC 73422434 Query 21418 AATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 ||||| | | ||| || | | || || | | || || ||||||| | Sbjct 73422435 GATTATTTCTTTTACTCTCTGCTTCGTTGGCTTGTATACCAGGTGCTTGAACATCAGGTA 73422494 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 |||| || || || ||||| || || || || || | ||||| |||||||| | || Sbjct 73422495 GACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCC 73422554 Query 21538 GGGCATTAATCCTCTCTTT-TTTAACCAAAATATTGACGCAAATGCTCCTG-AAAAGAAA 21595 |||| | ||| || ||| || | ||| ||||| | ||||| | || | ||||||| Sbjct 73422555 CGGCACCAGTCC-CTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAG 73422613 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 || || || |||||||| || || | |||||| | | ||||| |||||| ||| Sbjct 73422614 ATTGGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCA 73422673 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 |||| | ||||| | ||||| || ||| | ||||| |||||||| || Sbjct 73422674 GTCCAATGCAAGGCCCAGTCAGCCTTCTC------ACAGGC-ATTGTTTCAATAGCATTG 73422726 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 ||||||| | |||||| | ||| | ||| ||| |||||| Sbjct 73422727 AAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 73422786 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 | ||| ||||| ||| | | | || || || | |||||| | ||||||| | | Sbjct 73422787 TTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACT 73422845 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||| || |||||| | |||||||| |||| | ||| |||||||| | || Sbjct 73422846 TGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACA 73422905 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT-C 21954 || || |||| | | |||||||| || || | | | | || ||| | | Sbjct 73422906 AAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTTCCCAGTGC 73422965 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | || || || || | || || || |||| ||||||||| | || ||| || || Sbjct 73422966 TGAT--CTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTT 73423023 Query 22015 ATACATAATCCAGATATCAT 22034 ||||| ||||||||||| Sbjct 73423024 GTACATCTGCCAGATATCAT 73423043 >seq23 Length=145441459 Score = 114 bits (126), Expect = 1e-20 Identities = 300/466 (64%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 || || ||||||| || ||| | || || || ||||| | || || || || | ||| Sbjct 104692633 TGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCA 104692692 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || |||| ||| | ||| ||||| | || | || || | ||| ||||| || ||||| Sbjct 104692693 TTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA- 104692751 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 ||| | || || || ||||||| || || | || ||| || |||| Sbjct 104692752 -----------GAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGGG 104692800 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATT 21700 || ||||| ||| |||| ||||| | ||||| | || | |||| ||| Sbjct 104692801 GACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATT 104692860 Query 21701 GTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNN 21760 || | |||||| || || |||| | | |||| | ||| | ||| Sbjct 104692861 GTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCAATA 104692920 Query 21761 NNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACAT 21820 ||| ||||||||||| ||||| ||||| || || || | || || || ||||| Sbjct 104692921 AGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAG 104692980 Query 21821 CTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATT 21880 | ||||||| | |||||| || |||||| | ||||||||||||| ||||| Sbjct 104692981 CGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATG 104693040 Query 21881 CCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||||||| || |||| || |||| | | ||||||||||| Sbjct 104693041 CCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATC 104693086 >seq32 Length=104043685 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||||| ||| | ||| | | | | | Sbjct 37927244 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATC 37927303 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 37927304 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 37927363 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 37927364 CCATAAAATCAAAGGGATTTTC 37927385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899423706680