Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 105 2e-17 seq27 93.3 1e-13 seq30 91.5 4e-13 seq32 84.2 6e-11 >seq23 Length=145441459 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 102459426 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCCCAGACGGAGACCGGTACCCCATACATG 102459485 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || ||||| ||| |||||||||| |||| || || || | Sbjct 102459486 CTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 102459545 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || |||||| Sbjct 102459546 AGCAACCTGTGTACAGAAATAGTAGAGTACACC 102459578 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| ||| ||||||||||| || || |||||| || || || |||||||| | Sbjct 102457150 AGCGCCCAGGCGCGTTTGCTATTTACCTGGAGCCTTGGCACTTAGACATCTTTGAGTTCC 102457209 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 |||| | ||| ||||| || || || ||| ||| ||||| ||||| |||| ||||| Sbjct 102457210 TTGACTTGAAGAAGAACACAGGCAAGGAAGAACAGCGAGCACGCGATCTCTTCTTTGCAC 102457269 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| | | || | || |||||||| |||||| Sbjct 102457270 TTTGGATCCCAGATCTCTTCATGAAGCGAGTGGAG 102457304 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || || ||||||| | || || ||||| |||||||| Sbjct 102466875 CAGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTCTATAAGACCGTGTGGGAAATC 102466934 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | ||| | | | ||||| ||||| | |||||||| ||| |||||||||| Sbjct 102466935 TCTCAGAAGACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATCGATCAGAGCCAG 102466994 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | || || |||| | || || ||| || || ||||| |||||| Sbjct 102466995 TCTTTAAACATCCATATTGCTGAGCCCAACTACGGCAAACTCACTAGTATGCACTTCTAC 102467054 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 102467055 GGTTGGAA 102467062 >seq27 Length=130694993 Score = 93.3 bits (102), Expect = 1e-13 Identities = 338/522 (65%), Gaps = 18/522 (3%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || |||||||| || || | |||||||| || | || || | ||||| Sbjct 87967030 TTTCCTCTGCTCACAACCAAA-GAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGG 87967088 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||| | | | || || | ||| |||||| Sbjct 87967089 TTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCCAAGGGAGTGAGAATCTGGGAT 87967148 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTC-GACAACGAAGAAGGTG 111492 | ||| |||| || |||||||| || ||| |||| || || | | | ||||| | Sbjct 87967149 GCTAATAGATCCCGAGACTTTCTGGA--CAGCTTGGGATTTTCTGCCCGACAGGAAGGGG 87967206 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 | || || |||||||| || || |||||| | || ||||| ||||| |||||| |||| Sbjct 87967207 ACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGACATG- 87967265 Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 || ||| || | ||| || ||| || || | || || || ||||| || | Sbjct 87967266 --GATTCAGATTACTCAGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCA 87967323 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | | |||||| | | | | || ||| |||| ||||||||||| | | Sbjct 87967324 AAACCAACCC---TGATGACAGAAGAATCATGTGTGCCTGGAACCCAAAAGATCTTCCCC 87967380 Query 111670 AAATGGCA----CTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATG 111725 |||||| || || || || ||| | || ||||| ||| | | ||| | Sbjct 87967381 TGATGGCACTGCCTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATATGGTGAATGGGGAG 87967440 Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || || ||||| | || ||| | || | ||||| ||||| ||||| || || || ||| Sbjct 87967441 CTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATT 87967500 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACA 111827 || || || | || || || | | | || || ||| | ||| Sbjct 87967501 GCCAGCTATGTTCTGCTCACCTACATGATTGCACATATCACA 87967542 >seq30 Length=120421639 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||| ||| |||||| ||||| |||||| || |||||| Sbjct 3353509 GCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCTA 3353568 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || | | | ||||| || || || ||||||||||| | || ||| | ||||| Sbjct 3353569 AAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAA 3353628 Query 22621 GGTCTTCA 22628 |||||||| Sbjct 3353629 GGTCTTCA 3353636 >seq32 Length=104043685 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||||||| |||||| ||||| |||||| || |||||| Sbjct 37937335 GCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGCTA 37937276 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || || | | | ||||| || || || ||||||||||| | || ||| | ||||| Sbjct 37937275 AAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGA 37937217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350143261874