Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq30 257 2e-63 seq23 224 1e-53 seq9 188 8e-43 seq29 96.9 4e-15 >seq30 Length=120421639 Score = 257 bits (284), Expect = 2e-63 Identities = 650/975 (67%), Gaps = 30/975 (3%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||||||||| | || || ||||| || |||| ||| ||| || || | Sbjct 3353991 TTAGAAATCTGCATCCAAGGTGAAGACATTATCG-GTGGTTTCCGC--CATGACTGCAAA 3353935 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 | | || || || |||| ||| |||||||||||||| || ||||| || || || Sbjct 3353934 TCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATG-- 3353877 Query 92862 ATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA 92916 ||| | | | | ||||| | || | | || |||| | ||| | || Sbjct 3353876 -TTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTG-AGAATCCAAGTTCTA 3353819 Query 92917 CAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 ||| |||||| ||||||||||| || |||||||| | ||||| |||| |||||||| | Sbjct 3353818 CAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAA 3353759 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 || | ||||| | || || || || || || | ||| ||| ||| || || | Sbjct 3353758 TGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAA 3353699 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| | ||||| | || || || | || || |||| | ||| | Sbjct 3353698 TGATTTCCCTCACTCTGTCTTCTGAAGGCTTGT-----ACTGAA----ACATCAGGCAGG 3353648 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||| || | |||||| || | || | |||| ||||| || || | || Sbjct 3353647 CAAAGTCACAGTGAAGACCTTCATCCC-TGCTGATCAGTTCATTTGAAAAAGTCAGTCCA 3353589 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | || |||| ||||| ||||| ||||||| |||||| ||||| || | || Sbjct 3353588 GGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATT 3353529 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGAT 93273 |||||||| || ||||| ||||| | | ||| ||||| | | || ||||| || Sbjct 3353528 CCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCT-AT 3353470 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | |||| | || ||||||||||||| | | || | |||||| || |||||||| Sbjct 3353469 CCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAA 3353410 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | | | | ||||| ||||| || || |||| | | ||||| || Sbjct 3353409 TAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTC 3353350 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || |||||||| || ||| || || || ||||| || || |||| | ||| Sbjct 3353349 TGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTG 3353290 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 || || ||| ||| | ||| || | |||||||| || || ||||| |||||||| Sbjct 3353289 GACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAA 3353230 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 ||| || || || || ||||||| ||||| || ||||||||| | ||| | | Sbjct 3353229 AAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGG 3353170 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || | ||||| | || || ||||| | ||||| || ||||| ||||| || || Sbjct 3353169 GAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTTATA 3353110 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT- 93692 ||| ||| || || |||| || |||||||| |||||||| | || ||| |||| Sbjct 3353109 CATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACC--TTCGGGAACTCTTT 3353052 Query 93693 -TTAGTAACGGCTCT 93706 |||| | ||||||| Sbjct 3353051 CTTAGGAGCGGCTCT 3353037 Score = 134 bits (148), Expect = 2e-26 Identities = 191/266 (72%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATT 93138 ||| |||| | ||| |||||||| |||||||| ||||||| || || || |||||| Sbjct 12680220 TTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTC-TGCTAATAAGCTCATT 12680162 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | ||||| | || || | |||||| |||||||||||||| |||||||| |||||| Sbjct 12680161 GGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAAGA 12680102 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||| ||||| || || ||||| ||||| ||||| ||||||| | ||| || | || Sbjct 12680101 ACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCAGC 12680042 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||||| || ||||| || || || ||||| | |||||| | || Sbjct 12680041 CTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATAGT 12679982 Query 93319 TTCGATAGCGTTAAATAGGTAATCTC 93344 ||| ||||| || || || || |||| Sbjct 12679981 TTCAATAGCATTGAAGAGATATTCTC 12679956 >seq23 Length=145441459 Score = 224 bits (248), Expect = 1e-53 Identities = 440/649 (68%), Gaps = 20/649 (3%) Strand=Plus/Plus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 ||| || ||||| | | ||| |||| | ||| ||| |||| |||||||| | ||| Sbjct 104692617 TGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTC 104692676 Query 93121 TCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 || || || || ||||||| | ||| | ||| || | ||||| || |||||||||| Sbjct 104692677 TC-TGCTAATAAGCTCATTGGAAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCC 104692735 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || ||||| || | |||||||| | ||||| ||||||| Sbjct 104692736 AGAATATCGATGCAAAG------------AAGACTCCTTCCACCACAGCAAAGGCCACAA 104692783 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCGGCTT 93296 | ||| || | || ||| | || | |||| || ||||| || || | Sbjct 104692784 CTCATTCTCCATA---TGGGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCT 104692840 Query 93297 TTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAAT 93356 | ||||| | |||||| | ||||| ||||| || || || || |||| || | |||| Sbjct 104692841 TCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGAAT 104692900 Query 93357 CTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAA 93416 || ||||| || || || | || ||||||||||| || | || ||||| |||| Sbjct 104692901 CTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAA 104692960 Query 93417 TTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA 93476 ||| ||| || |||||||| | || || || | || |||||||| ||||| ||| | Sbjct 104692961 TTTAGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCA 104693020 Query 93477 CGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAA 93536 | | |||||||||||||| ||||| ||| |||| ||||||| | || ||||| Sbjct 104693021 CCAAGTTTTCATTGACTATGCCATCACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAA 104693080 Query 93537 AATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTT 93596 ||| | ||||||| ||| || ||||| | | | | || ||||| || || | Sbjct 104693081 AATATCTCTCATCCAGTTTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCT 104693140 Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 | | | |||||||||| || || || ||||| |||||||| | ||| || || | |||| Sbjct 104693141 CCTTGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATAGTATT 104693200 Query 93657 GAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 ||| ||||| | |||||| | || || ||| | ||||| ||||| Sbjct 104693201 CAATGGGAAAGACAACAAAATGGCAGGGATTTTCTCTCAGTAATGGCTC 104693249 >seq9 Length=156508116 Score = 188 bits (208), Expect = 8e-43 Identities = 426/632 (67%), Gaps = 14/632 (2%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| || | ||| || | ||| | | ||| |||| | | | || Sbjct 73422439 ATTTCTTTTACTCTCTGCTTCGTTGGCTTGTATACCAGGTGCTTGAACATCAGGTAGACA 73422498 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGG 93156 ||||| |||||||| ||||||| || || || ||||||| ||||| | || || Sbjct 73422499 AAGTCCCAGTGTAAACCCTCGTCTC-TGCTAATAAGCTCATTGGAAAATGTAAGGCCCGG 73422557 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa-aaTATAC 93215 | |||||| ||||||||||||| ||||| | |||||| |||||||||| || || Sbjct 73422558 CACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATTG 73422617 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||| || || ||||| ||||||| ||||| ||| | || || | ||| Sbjct 73422618 GTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCAGTCC 73422677 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | || ||||| || || |||| | ||| | |||||| ||||| || || | Sbjct 73422678 AATGCAAGGCCCAGTCAGC---CTTCTCA----CAGGCATTGTTTCAATAGCATTGAAAA 73422730 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | || ||| || | | |||| ||||| || || || | ||| ||||||| || Sbjct 73422731 GATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTAG 73422790 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || | ||| | || ||||||| || || ||||| | ||| || || | || | Sbjct 73422791 AGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATA-AAACAGCCAGCCTCTGTAACTTGAA 73422849 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||||| ||| || | ||| |||||| ||| ||||| || |||| | Sbjct 73422850 CTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAGA 73422909 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | || |||||||||| ||||||| ||| || ||||| | | ||| Sbjct 73422910 AAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTTCCCAGTGCTGAT 73422969 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 || || ||||| || || || || |||||||||| | || || ||||| |||||| Sbjct 73422970 --CTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTAC 73423027 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAA 93666 || | ||| || || || || | || ||||| Sbjct 73423028 ATCTGCCAGATATCATGGTACTAGATGGGAAA 73423059 >seq29 Length=120129022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||||| || || || ||||||| ||||| | || || | ||| || |||||||| Sbjct 24711801 TCGTCTC-TGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTT 24711743 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 |||||| ||||| || |||||| ||| ||||| || || ||||| ||||| ||||| || Sbjct 24711742 GAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 24711683 Query 93235 CACAATACGTTC 93246 ||||| ||||| Sbjct 24711682 CACAACGCGTTC 24711671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859359122680