Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq30 161 2e-34
>seq30
Length=120421639
Score = 161 bits (178), Expect = 2e-34
Identities = 262/374 (70%), Gaps = 5/374 (1%)
Strand=Plus/Plus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
|| ||||| || || || || ||||| || | ||||||||||| |||||||| | |
Sbjct 12679964 CTCTTCAATGCTATTGAAACTATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGC 12680023
Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
||||| | | || || ||| || || || | || |||||| ||||||| ||
Sbjct 12680024 TGGATTGGGGACAAAGAGGCTGCGTATGGAGAAAGAGTTGTGGCCTTTGCCGCCGTAGAA 12680083
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GAT 42787
|| |||||||| || || | || || || || || ||||||||| | | || | | |||
Sbjct 12680084 GGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTGTGGCTCAAGAA-ACGGGGACTGAT 12680142
Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847
||| || || || || || || || || || ||||| |||||||| | || |||||||
Sbjct 12680143 GCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTT 12680202
Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907
||||||||| ||||| | ||||| |||||||| ||| || || ||||| |
Sbjct 12680203 TGCCTGCCTGATGTTC---AAGCACCTGGCACACAAGCCGTCGGAGCAGAGGGTCAAAGA 12680259
Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967
|| ||||| || || ||| ||| |||||||||||||| || | ||||||||
Sbjct 12680260 GATAATCACTACCGCGGTTAGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCCGTGAA 12680319
Query 42968 CCTGGTCGGCATGA 42981
|| |||| ||||
Sbjct 12680320 GCTCATCGGGATGA 12680333
Score = 127 bits (140), Expect = 4e-24
Identities = 315/473 (67%), Gaps = 14/473 (3%)
Strand=Plus/Plus
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
|||| |||| ||| || |||| | ||||| || || ||| ||| || || || |
Sbjct 3353195 ACGAGAAGTATTTTATCTCCCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTAA 3353254
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
|||| ||| ||| | || | | ||||| ||| ||| | | ||||||||
Sbjct 3353255 ATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTCCAGGTTCCGGAGACTCACTGCTTCT 3353314
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
| ||||| ||||| ||| ||||| || ||||| ||| ||||| ||| | |||
Sbjct 3353315 ATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACA 3353374
Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGC-----TGTTCAAGGCCATGGAGACGAT 42631
| |||||| ||||| | | || ||| | || || || || || || ||
Sbjct 3353375 CTTACATCAGAGATCC-----AAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAAT 3353429
Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG-AGAGTCCCGACGCAA 42690
||| | | ||||| || || |||| ||| || |||||| | ||| | | | |
Sbjct 3353430 GCCATATGTTAAGAAAAAAGCAGACTAGGCTCTGCGCTGGATAGCAGA-TAGGAAATCTA 3353488
Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750
| || || || || |||| |||||| | || || || || || | |||||| || | |
Sbjct 3353489 CTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCAT 3353548
Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809
| || | || |||||||| ||| ||| ||| || ||||| ||||| || || || ||
Sbjct 3353549 TTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTC-ATGCCTGGACTGACTTTTTCAAAT 3353607
Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862
||||| ||||||||||| || || || || | |||||||||||||| ||||
Sbjct 3353608 GAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTT 3353660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944336756522320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |