Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq30 161 2e-34 >seq30 Length=120421639 Score = 161 bits (178), Expect = 2e-34 Identities = 262/374 (70%), Gaps = 5/374 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || ||||| || | ||||||||||| |||||||| | | Sbjct 12679964 CTCTTCAATGCTATTGAAACTATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGC 12680023 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| | | || || ||| || || || | || |||||| ||||||| || Sbjct 12680024 TGGATTGGGGACAAAGAGGCTGCGTATGGAGAAAGAGTTGTGGCCTTTGCCGCCGTAGAA 12680083 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GAT 42787 || |||||||| || || | || || || || || ||||||||| | | || | | ||| Sbjct 12680084 GGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTGTGGCTCAAGAA-ACGGGGACTGAT 12680142 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || || || || || || || || || ||||| |||||||| | || ||||||| Sbjct 12680143 GCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTT 12680202 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||||||||| ||||| | ||||| |||||||| ||| || || ||||| | Sbjct 12680203 TGCCTGCCTGATGTTC---AAGCACCTGGCACACAAGCCGTCGGAGCAGAGGGTCAAAGA 12680259 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 || ||||| || || ||| ||| |||||||||||||| || | |||||||| Sbjct 12680260 GATAATCACTACCGCGGTTAGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCCGTGAA 12680319 Query 42968 CCTGGTCGGCATGA 42981 || |||| |||| Sbjct 12680320 GCTCATCGGGATGA 12680333 Score = 127 bits (140), Expect = 4e-24 Identities = 315/473 (67%), Gaps = 14/473 (3%) Strand=Plus/Plus Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 |||| |||| ||| || |||| | ||||| || || ||| ||| || || || | Sbjct 3353195 ACGAGAAGTATTTTATCTCCCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTAA 3353254 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 |||| ||| ||| | || | | ||||| ||| ||| | | |||||||| Sbjct 3353255 ATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTCCAGGTTCCGGAGACTCACTGCTTCT 3353314 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | ||||| ||||| ||| ||||| || ||||| ||| ||||| ||| | ||| Sbjct 3353315 ATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACA 3353374 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGC-----TGTTCAAGGCCATGGAGACGAT 42631 | |||||| ||||| | | || ||| | || || || || || || || Sbjct 3353375 CTTACATCAGAGATCC-----AAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAAT 3353429 Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG-AGAGTCCCGACGCAA 42690 ||| | | ||||| || || |||| ||| || |||||| | ||| | | | | Sbjct 3353430 GCCATATGTTAAGAAAAAAGCAGACTAGGCTCTGCGCTGGATAGCAGA-TAGGAAATCTA 3353488 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | || || || || |||| |||||| | || || || || || | |||||| || | | Sbjct 3353489 CTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCAT 3353548 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 | || | || |||||||| ||| ||| ||| || ||||| ||||| || || || || Sbjct 3353549 TTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTC-ATGCCTGGACTGACTTTTTCAAAT 3353607 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||||| ||||||||||| || || || || | |||||||||||||| |||| Sbjct 3353608 GAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTT 3353660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336756522320