Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq27 156 4e-33 seq16 91.5 1e-13 >seq27 Length=130694993 Score = 156 bits (172), Expect = 4e-33 Identities = 474/724 (65%), Gaps = 24/724 (3%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||||||||| | ||| || || ||||||||||| |||| | ||| || || Sbjct 87967623 AGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGGACAAAATCACCT 87967564 Query 20231 GG---------TCTA-AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCT 20280 || ||| || || || | ||| |||| ||| || || | || |||||| Sbjct 87967563 GGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCT 87967504 Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 ||||||||| || || || |||| |||||| ||||| |||||||| || ||||| || || Sbjct 87967503 GGCAATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGA 87967444 Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATA--ACAAGTGA--CAGGGCGGAAGCGCCA 20396 ||||| || | | | ||| || ||||| | || | | ||| || || |||| Sbjct 87967443 TAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCA 87967384 Query 20397 TCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTAT 20456 ||| | | || |||||||| |||||| ||||||||||| || | || || Sbjct 87967383 TCAGGGGAAGATCTTTTGGGTTCCAGGCACAC---ATGATTCTTCTGTCATCAGGGTTGG 87967327 Query 20457 TTTTTATTAAATCCA-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA 20515 |||| || || | || | | | || ||||| | || || |||| || || | | Sbjct 87967326 TTTTGATGGTGTCAATCACTTTTTG-CAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAA 87967268 Query 20516 TCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAA 20575 ||| ||| |||| | || ||||| |||||||| |||||||| ||||| || |||| Sbjct 87967267 TCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGG 87967208 Query 20576 TCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTG 20635 ||||| ||| || | | | || | | |||| || || | ||| | ||| Sbjct 87967207 TCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCTATTAGCA 87967148 Query 20636 TCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAAC 20695 ||||| || | ||||| | || | || | | | || ||||| | |||| Sbjct 87967147 TCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAAC 87967088 Query 20696 CAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 || | || ||| | || || || ||| ||||| | || || || || | ||||| Sbjct 87967087 CACAACAACTCCTCCAAAACACCCTTCCAGAACACTC-TTTGGTTGTGAGCAGAGGAAAT 87967029 Query 20756 TGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTG 20815 | || | ||| || | | ||||||||||| || | | |||||||| |||| || Sbjct 87967028 TCATCTCTCAGGCTGGATCGTGCCTGCATGCCGAACACCTACAGGGTGCCAGTGCCCATG 87966969 Query 20816 CGGTCGAGTCGATC--GCTGCCACGGCACAAAATTTCCCTCAACTGCCTGAGATACTGAA 20873 ||||| || || | ||| | ||||||||| | | || |||||| || ||||| | Sbjct 87966968 CGGTC--CTCCTTCTTGAAGCCGCAGCACAAAATGTGCTCCACCTGCCTCAGGTACTGGA 87966911 Query 20874 GTTC 20877 |||| Sbjct 87966910 GTTC 87966907 >seq16 Length=151834684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || | ||| |||| ||| || || | || | ||||||||||||||| || || Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||| ||||| |||||||| || ||||| || || || || || | | Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 ||||| || ||||| | || || || || || ||||||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCA 30063402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371657947880