Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq48 96.9 3e-15 seq26 96.9 3e-15 seq22 91.5 1e-13 seq31 86.0 6e-12 seq23 82.4 8e-11 seq7 82.4 8e-11 >seq48 Length=23158 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 14499 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 14558 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 14559 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 14618 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 14619 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 14678 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 14679 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 14711 >seq26 Length=124595110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 83409872 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 83409813 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 83409812 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 83409753 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 83409752 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 83409693 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 83409692 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 83409660 >seq22 Length=149736546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 122457116 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 122457057 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 122457056 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 122456997 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | | | | ||||| | | || ||||||| ||| | || Sbjct 122456996 CTGGATCTTGGCCTTTACATTTCCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 122456937 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 122456936 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 122456904 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGT-ACGCGAGT 138460 ||| || | ||| | | | |||||||||||||||||||||| || ||| | || | | Sbjct 6330010 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTTAGACAAAGTCAGGCCA-T 6330068 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || || || ||||| | | ||| || | ||| || || ||||| || ||||| || | Sbjct 6330069 CTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 6330128 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | ||| || |||| | ||| | ||||| | | || |||| || ||| | | Sbjct 6330129 CCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCGTGATGG 6330188 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || || || || |||||||||||||| Sbjct 6330189 TTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 6330222 >seq31 Length=124902244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGT 138460 ||| || | ||| | | | ||||||||||||||||||||||| || ||||| || | | Sbjct 45858334 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACAAAGTACAGCCA-T 45858392 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || || || ||||| | | |||| || | ||| | || ||||| || ||||| || | Sbjct 45858393 CTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTAATCAGGAGGAATTCCTTCCTTAT 45858452 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | | | || |||| | ||| | ||||| | | || ||||| | ||| | | Sbjct 45858453 CCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATAG 45858512 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || |||||||||||||| Sbjct 45858513 TTTTCCCTTTAAGGGTCTTCACAAAAATCTGCAT 45858546 >seq23 Length=145441459 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| | || Sbjct 51458272 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCTGGCCATC 51458213 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | ||| || | || || || ||||| || ||||| || || Sbjct 51458212 TTCCAGCTGCTTACCAGCAAAGACCAGCCTCTACTGATCAGGAGGAATTCCTTCCTTATC 51458153 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||||| ||||| | | || ||||||| ||| | || Sbjct 51458152 CTGGATCTTGGCCTTTACATTTTCCATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 51458093 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||| | |||||||| Sbjct 51458092 TTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 51458060 >seq7 Length=182113224 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 145510444 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 145510503 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | | ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 145510504 TTCCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 145510563 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 | | || |||| | ||| | ||||| | || ||||||| ||| | || Sbjct 145510564 CTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCGAGCGTGATGGT 145510623 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || |||||||||||||| Sbjct 145510624 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 145510656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261115921040