Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 172 8e-38 seq7 131 2e-25 >seq1 Length=195471971 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 150105655 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 150105596 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || |||||||| || |||||||| || || |||||| Sbjct 150105595 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 150105536 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || ||||| | ||| |||| || ||| Sbjct 150105535 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGCTCTACCATGGTCTCCCCAAAG 150105476 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| |||||||| || | | | ||| ||| ||||| | | |||| | Sbjct 150105475 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 150105416 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| ||| || ||||| || |||||||| ||| Sbjct 150105415 TCACTGTAGAGGGCTTTCAATTCTGCAGCCATTTCCTTCTCTCCT 150105371 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 ||||||| || | ||||| |||||||| || || || || || ||||| | ||||| | Sbjct 150104097 TGGTTTGGAATAGTTGCTCATCACCCCACTCAGGATGCTCCTGCTTGAGTATGTCGCACA 150104038 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | |||||||| || | ||||| |||||||| |||||||| | ||| ||||| | ||||| Sbjct 150104037 CTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 150103978 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | |||||| ||||| |||| | || || | | || | || | ||| | Sbjct 150103977 AGACTTCCTGCCCCACAGCAAACTGCAGGTTCTCAGGGATGTGAGGAGGGTAGATCATCT 150103918 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| ||||||||||||| || || |||| |||| Sbjct 150103917 CTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAATGACCT 150103867 Score = 113 bits (124), Expect = 7e-20 Identities = 202/293 (69%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || ||||| || || | | ||| || | | ||| Sbjct 150104569 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAACTGAGTGAGTCCATGTTCCAGGAG 150104510 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || |||| | | | |||| | ||| | ||| || Sbjct 150104509 GATGGAGTTGTTGTAGAGAAACTGTTTGAAGCTGTACTCCTGGTCTTCAATGTTGAAGGT 150104450 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||| | |||||| | ||||| || ||||| || | || || |||||||| Sbjct 150104449 GTCGGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGGTTCTG 150104390 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 150104389 ATACTGGAACTGCTGGT--TGAAAAGGAGCTCTGGGTCAAACTTGAGTTTGAAGTGGTAA 150104332 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || || || || || | | ||| | || || || || || || || Sbjct 150104331 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATAGTCTCTCCTGT 150104279 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| ||||| || | ||||| ||||||||| | || ||||| || | || || Sbjct 150102138 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 150102079 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||| ||||| | | ||||| Sbjct 150102078 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 150102019 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 150102018 GGTGGACTGTCAATCAAATATGATCTGGCT 150101989 >seq7 Length=182113224 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || ||||| || ||||| |||||||||||||||||| | Sbjct 36251233 GCTGTGTTGACAAGGTTGAAGCCCACGTCACCACCGAACGTGCTGGGTTTCCAGTACTCT 36251174 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| ||| | | ||| || || | |||||| |||||||||| ||| || Sbjct 36251173 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 36251114 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || || || || ||||||| ||| | || || | | || || | ||||| Sbjct 36251113 ATACTTTCTCCAAAGATGGAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAAC 36251054 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| || || || | |||||||| ||||| ||||||||||| ||| Sbjct 36251053 TCTAAAGCATCGATGTCACCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 36250994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723726127353800