Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 6e-15 >seq30 Length=120421639 Score = 96.9 bits (106), Expect = 6e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 159906 GGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACT 159965 ||| ||| |||| ||||| |||||||| ||||| | |||||||| | || | || Sbjct 12680225 GGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCT 12680166 Query 159966 CGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAA 160025 | ||||| | | ||||||||||| | || || |||||||| || || | |||| Sbjct 12680165 CATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAA 12680106 Query 160026 AAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAG 160085 ||| |||| ||| ||||| || || ||||| ||||| ||||| | || || ||| | | Sbjct 12680105 AAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACG 12680046 Query 160086 AGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 || | |||| |||| | |||||| ||||||||||| Sbjct 12680045 CAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTT 12680000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153142535920