Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq30 387 2e-102 seq23 273 2e-68 seq9 255 7e-63 seq32 116 4e-21 >seq30 Length=120421639 Score = 387 bits (428), Expect = 2e-102 Identities = 624/894 (70%), Gaps = 15/894 (2%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||| | | | | ||||| || | ||||| ||| ||||||||||| ||||| || || Sbjct 3353946 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 3353887 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 |||||| || |||||||||||||| ||||||| | | | | | || ||| |||||| Sbjct 3353886 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 3353827 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 | ||||| |||| ||| || |||||||| | ||| || ||| ||| ||| | |||| | Sbjct 3353826 AAGTTCTACAAGTAATCTGTCAGCTACAAACTCAATGTACTGT-TTCGTCAAAACACAGT 3353768 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 ||||||| || | |||||| | || ||||| | ||| || || || || | || | Sbjct 3353767 TCATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAG 3353708 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACA 18955 | || | || || ||||| ||||| ||| ||| ||| ||| Sbjct 3353707 CATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTACTGAA---------ACA 3353657 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 ||| || ||||| ||||| || || || || || || || |||| |||||| ||||| | Sbjct 3353656 TCAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAG 3353597 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | |||||||| || ||||| || |||| ||||||||| | ||||||||||||||| | Sbjct 3353596 TCAGTCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGA 3353537 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 || | || ||||| || || ||||| || || | |||||| ||| || ||| | ||| Sbjct 3353536 AGGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTAT 3353477 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 ||||| ||| ||| | || || || || || ||| |||||||||| || || | Sbjct 3353476 CTGCTATCCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTG 3353417 Query 19196 AATTAAATAGATACATACGCTCATC--TGTATCTTTAACATATGCATCTATCAATAAACT 19253 |||||| | | || | || || || |||| | | || | ||||| | |||||| Sbjct 3353416 CGTTAAAT--AAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACT 3353359 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| ||||| |||| ||| || || |||||||| || || || || | || Sbjct 3353358 GTACATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTC 3353299 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | | ||| || || || ||| | || ||||| |||||||| || ||||||||||| Sbjct 3353298 CGGAACCTGGACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACT 3353239 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 ||||||||||| ||||| | || ||||||| || || || || | | | || Sbjct 3353238 GGCTGCAAAAAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTT 3353179 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | | | | || || || || || ||||| ||||||| ||||| ||| ||| Sbjct 3353178 CCAGTGAGGGAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGC 3353119 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || |||||||| |||| |||||| |||| || || ||||| || ||||| || Sbjct 3353118 TTGCTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 187 bits (206), Expect = 3e-42 Identities = 201/266 (76%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || || || ||||||| || ||||| || || |||| ||||||||||| || || | Sbjct 12680226 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 12680167 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| |||||||| | || ||||||||||| | ||| || | ||| ||||| || ||| Sbjct 12680166 TCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCA 12680107 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || || |||||||| || |||||||| || ||||| || || | |||||||||||| Sbjct 12680106 AAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATAC 12680047 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 ||| || || | |||||| || ||||| ||||||||||| || ||||| ||| Sbjct 12680046 GCAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGC 12679987 Query 19183 ATTGTCTCTATAGAATTAAATAGATA 19208 || || || |||| ||| || ||||| Sbjct 12679986 ATAGTTTCAATAGCATTGAAGAGATA 12679961 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| || | | || ||| |||||||| Sbjct 12679743 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAAATCGA---CATGACTCCCAT 12679799 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 12679800 CCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATT 12679859 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||| || ||||| ||||||| ||| Sbjct 12679860 TTCCATGAAGTCAAACGGATTTTCTAC 12679886 >seq23 Length=145441459 Score = 273 bits (302), Expect = 2e-68 Identities = 633/946 (67%), Gaps = 31/946 (3%) Strand=Plus/Plus Query 18609 TGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCC 18665 || ||| || ||| ||| ||| | ||||||||||||| | |||||| || ||||| Sbjct 104692295 TGCTTAGAAGTCAGCATGCAAGGTAAAAGAATTCTCTG---TGGAATTCGACATGACTCC 104692351 Query 18666 CATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATAT 18725 ||| | ||||| ||| | ||| || |||||||| | |||||||| |||| ||| || Sbjct 104692352 CATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAAT 104692411 Query 18726 ACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAA 18785 | |||| | || ||||||||||||| ||| | | || || || | || | || | Sbjct 104692412 ATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCCAGCTCCAG 104692471 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 | | || || || || | ||||| ||| || ||||||| | ||||| || | Sbjct 104692472 TGGAAGCCTGTCAGCCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTTGCCCCGAA 104692531 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGA-TA 18904 | || ||||| | || || | ||||| || || |||| | || | | | | Sbjct 104692532 GAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGTT 104692591 Query 18905 TAATAGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACAT 18963 | ||| | ||||| | || || | || || || || || || ||||||| || Sbjct 104692592 TTATATCTTTTACTCTTTGCTCCAAT-GGCTTGTGTACCAGGTGCTTGAACATCAGGCAG 104692650 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||| | || || |||| |||| |||||| || || | ||||| |||| ||| | ||| Sbjct 104692651 GCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCATTGGAAAGTGTAAGACCC 104692710 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 |||||||||| | || || | ||||||||| || ||||| |||| | Sbjct 104692711 GGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAAG---------AAGACT--- 104692758 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| || | ||||| || || | || ||||||||| | || || | | || Sbjct 104692759 CCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGGGGACTCTTTGTCCCCAGTC 104692818 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || ||||| ||||||||||| || ||||| |||||||| | |||| ||| || Sbjct 104692819 CAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAG 104692878 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACAT 19259 ||||| | || | | ||||||| ||| | | ||||||| ||||||||| Sbjct 104692879 AGATATTCTCTTTCCTTGGAATCTTTA----ATGTAAGTGTCAATAAGGGGACTGTACAT 104692934 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| || || || ||||| || || || | || || || ||||| | || ||||| | Sbjct 104692935 TTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGGCCTCTGTAAC 104692994 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || ||||| | ||||| || ||||| |||||||| ||||| |||||||| ||| | Sbjct 104692995 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTAC 104693054 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAAT 19438 ||| || || | || || ||||||| | | ||||| || || | | | ||| | Sbjct 104693055 AAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATC-CAGTTTCAGAGCTTCCCAGT 104693113 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | |||| | || || | || || || | | |||||||| || ||||| ||||| | Sbjct 104693114 GTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAAAGGAGGCCTCAGCTTTCT 104693173 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||||| | ||| |||||| |||| || ||||| | |||||| Sbjct 104693174 TGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAACAAA 104693219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || | || || | |||||| || | Sbjct 102467061 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 102467002 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || |||||||| || || |||||||| || |||||||| | | || | | Sbjct 102467001 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 102466942 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | ||| || | ||| || || Sbjct 102466941 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGG 102466893 >seq9 Length=156508116 Score = 255 bits (282), Expect = 7e-63 Identities = 621/929 (67%), Gaps = 19/929 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCA--TTACTCCCATT 18669 |||||| ||| || |||| | ||| ||||||| | | ||||||| | |||||||| Sbjct 73422145 TTAAAAGTCAGCACCCAAGGTAAACGAATTCTTTG---TGGAATTCACATGACTCCCATC 73422201 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || | |||| || |||||||| || || ||||| |||||||| ||| | Sbjct 73422202 CACTGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTT 73422261 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || |||||||| ||| ||| | | || || || || || | || | | Sbjct 73422262 TCCATGAAGTCAAATGGGTTTCCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATA 73422321 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || |||| || ||||||| ||| || ||||||| | || || || | || | Sbjct 73422322 AGCCTATTGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTTATCTCGATCAGC 73422381 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||||| | || || | || | | || ||||| | | | | | || || Sbjct 73422382 ATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCTAAACTCGTTGGCGATTATT 73422441 Query 18910 GATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| | |||| || || ||||| || || || ||||||| | |||| Sbjct 73422442 TCTTTTACTCTCTGCTTCGTT-GGCTTGTATACCAGGTGCTTGAACATCAGGTAGACAAA 73422500 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 || || |||| ||||||||||| || || | ||||| |||||||| | || |||| Sbjct 73422501 GTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCAC 73422560 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG-AAAAGAATATACCTT 19087 |||||| ||| || | ||||||||| | ||||| || |||| ||||||| || || Sbjct 73422561 CAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATTGGTT 73422620 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 |||| || ||||| || || | || |||| ||| |||| || || | | |||| | Sbjct 73422621 CTACCGCAGCAAAGGCCACAACTCGTTCTGCATGTGTAGCTTCTTTGTCCCCAGTCCAAT 73422680 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| |||||||||| |||| |||||||| || |||| ||| || |||| Sbjct 73422681 GCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAAAAGAT 73422733 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || | | |||||||| || | || || | | ||||||||||| || | Sbjct 73422734 ATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTAGAGT 73422793 Query 19268 GAATATTTTCTATAGCCA-TCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 | || ||| | |||| | || || || | |||||| | || ||||| | || ||| Sbjct 73422794 GTATGCCTTCCCT-GCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACTTGAACT 73422851 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||||| || ||||| ||| |||| | ||| |||||||| || |||| || Sbjct 73422852 TCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAGAAA 73422911 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATA 19446 || | || || ||||||||| | ||||| | | || | |||| | | || Sbjct 73422912 GCCAGAACGTGAGCTATAAAATGTCTCTCATC-GGGTTTCAGAGCTTCCCAGTGCTGATC 73422970 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | || || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 73422971 TCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTACATC 73423030 Query 19507 TTCCATATATCACGATATTGTATAGGAAA 19535 | ||| |||||| | || | || ||||| Sbjct 73423031 TGCCAGATATCATGGTACTAGATGGGAAA 73423059 >seq32 Length=104043685 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 37937217 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 37937276 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||||||||||||||| ||||| || ||||| || || ||||| || Sbjct 37937277 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 37937336 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 37937337 ACCACTCTTTCCCC 37937350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107345543480