Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq30 226 3e-54 seq9 147 3e-30 seq23 138 1e-27 seq29 91.5 2e-13 >seq30 Length=120421639 Score = 226 bits (250), Expect = 3e-54 Identities = 407/590 (69%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| || | ||||||||| || || |||| |||||| ||||| || | | Sbjct 3353651 CAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGT 3353592 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||||| || || | ||| |||||||| ||||| |||||||| ||| || Sbjct 3353591 CCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAA 3353532 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| || || ||||| || || | | | || ||||| || | ||| | Sbjct 3353531 ATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCT 3353472 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||| | | | ||||| ||| |||||| || |||||||||||||| || Sbjct 3353471 ATCCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTA 3353412 Query 37416 AAGAGAAAGttt-ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || | ||| | ||||||| |||| | || ||||| || ||||||||||| ||||| Sbjct 3353411 AATAAAAATTCCCTTTTCTTTGG-ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACAT 3353353 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 || ||||||| ||| || || |||||||| ||||| || || || || | | Sbjct 3353352 CTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC 3353293 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 || || || | | ||| | || | ||||||||||| || || |||||||| ||||| Sbjct 3353292 CTGGACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGC 3353233 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--ATTTGATAATTTTTTCCAA 37652 ||| || || | | | ||||||| | || || |||| | || ||||| Sbjct 3353232 AAAAAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTT--AAGCTTGTTCCAG 3353175 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 | | | | ||||| || ||||| || || | ||||| ||| |||| ||| | Sbjct 3353174 TGAGGGAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGC 3353115 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 |||||||| |||| |||||| || || |||||||| || ||||| || Sbjct 3353114 TTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 12679788 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 12679847 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 12679848 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 12679880 >seq9 Length=156508116 Score = 147 bits (162), Expect = 3e-30 Identities = 310/457 (68%), Gaps = 13/457 (3%) Strand=Plus/Plus Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTG 37239 |||| || || |||||||| || ||||| || || | ||||| ||||| || | || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 37240 GCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA-GAAAATA 37298 ||| | || ||| || | ||| ||||| | ||||||||| |||||||| ||| || Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA--TAATCAGAAA 37356 ||| || || ||||| || |||| ||| | | | || | || | || | Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTT--CTGCATGTGTAGCTTCTTTGTCCCCAG 73422674 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTA 37416 |||| | | ||| || ||||| |||| || |||||||||| || || | Sbjct 73422675 TCCAATGCAAGGCCCAGTCAGCCTTCT------CACAGGCA-TTGTTTCAATAGCATTGA 73422727 Query 37417 AGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | ||| | | |||||||| |||| | || ||||| ||||| || | ||| ||||||| Sbjct 73422728 AAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTT 73422787 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 |||||| || ||| | | | || || |||||||| || | ||| || | | || Sbjct 73422788 TAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTT 73422846 Query 37537 GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAA 37596 |||| || | ||| | || | |||||| |||| | ||| |||||||| || ||| Sbjct 73422847 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAA 73422906 Query 37597 AGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||||||| ||||| | |||||||||||| ||||| Sbjct 73422907 AGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATC 73422943 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| ||||| || || ||||| | || || || |||||||||||||| Sbjct 73422189 CATGACTCCCATCCACTGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 73422248 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 || ||| ||||||||||| || |||||||| || Sbjct 73422249 TAATGAAATATTTTCCATGAAGTCAAATGGGTT 73422281 >seq23 Length=145441459 Score = 138 bits (152), Expect = 1e-27 Identities = 189/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| || ||||| ||||||| ||| || || |||||| | | | | Sbjct 104692830 CCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATATTCTCT 104692889 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||| | |||| | || ||||| ||||| || ||| |||||||||||||| || || Sbjct 104692890 TTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTT 104692949 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 ||| || || || | || ||||| ||||| | || || | | |||||| || | Sbjct 104692950 TTCCATGGCAATTTAGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCT 104693009 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| | || | ||||||||||| ||||| |||||||| ||| |||||||||| ||||| Sbjct 104693010 AAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTACAAAGAAAGCCAGAAC 104693069 Query 37610 ATATTTTATAAAATGTCTTTCATC 37633 | |||||||| ||| ||||| Sbjct 104693070 GTGAGCTATAAAATATCTCTCATC 104693093 >seq29 Length=120129022 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 24713187 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 24713128 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 24713127 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 24713095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315267380280