Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq27 300 1e-76 seq16 118 9e-22 seq30 82.4 6e-11 >seq27 Length=130694993 Score = 300 bits (332), Expect = 1e-76 Identities = 434/610 (71%), Gaps = 18/610 (3%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 |||||| | |||||||| || | |||| |||||| | || || ||||||| ||||| Sbjct 87967635 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGG 87967576 Query 29851 ACAAACTCTCCCGGTT--------CT--AGCCCGGTGACGTGAGCCATCATGTACGTGAG 29900 ||||| || || || | || || || |||| || || |||||||| ||||| Sbjct 87967575 ACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAG 87967516 Query 29901 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 29960 ||| |||||||| ||||| ||||| || || || ||||| || || ||||||||||| Sbjct 87967515 CAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTA 87967456 Query 29961 GAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGG--- 30017 ||||| || || ||||| || | || || |||||||| | || ||||| || Sbjct 87967455 AAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGG 87967396 Query 30018 -AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGT 30076 ||| || ||||| ||| | ||||| ||||||||||| ||| ||||| | |||| Sbjct 87967395 CAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACAC---ATGATTCTTCTGT 87967339 Query 30077 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 30136 | || |||||| | ||||| ||| | | ||||||||||| || || || || | Sbjct 87967338 CATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTG 87967279 Query 30137 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196 |||| |||| |||||| ||||||||||||| ||||||||||| ||||| || || | Sbjct 87967278 AGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAA 87967219 Query 30197 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256 | || |||||||| || || | | | || ||| |||||| |||||||| || Sbjct 87967218 CTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGG 87967159 Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30316 | | || || |||||||| | || ||||| ||| | ||||| | |||||||| | Sbjct 87967158 ATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATC 87967099 Query 30317 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 30376 | ||| ||||||| || |||||||| || ||||||| || || || ||||| |||| Sbjct 87967098 CCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGA 87967040 Query 30377 GGAGGGGAAA 30386 | || ||||| Sbjct 87967039 GCAGAGGAAA 87967030 >seq16 Length=151834684 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || ||||||||||| ||||| || || || || || | | Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 || || |||||||| | || ||||| ||||| || ||||| ||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 30063404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || ||||||||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 30068473 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 30068532 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | | | || ||| |||||| ||| |||| ||| || ||||| || Sbjct 30068533 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAATCTCGGGATCCATTGGCATC 30068592 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 30068593 CCAGATTCTCACTCCCTTTGAGGACAATTCTTTAGCATTTGTGGATCC 30068640 >seq30 Length=120421639 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 92358032 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 92357973 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 92357972 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 92357925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616569134411