Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 1e-13 seq7 89.7 4e-13 >seq9 Length=156508116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || |||| || | | || | | |||| Sbjct 121115037 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTGGTCAGACAATGTACGGCCATCT 121115096 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 | || |||||||| ||||| |||| | ||| ||||| || | || ||||| ||||| Sbjct 121115097 TTCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGCAAGTCCTTCCTTATCC 121115156 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 || || || |||||| |||||| |||||| || | || || || || |||| Sbjct 121115157 TGGATCTTGACCTTTACATTTTCTATAGTGTCCGAGGGCTCAACCTCGAGCGTGA 121115211 >seq7 Length=182113224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | ||| | |||| Sbjct 92561434 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AAAGTATGGCCATCT 92561379 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||| | ||||| | ||| ||||| || ||||| |||| |||| Sbjct 92561378 TCCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCCTTTCTTATTC 92561319 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 || || || |||||| |||||| |||||| || | ||| | ||||| Sbjct 92561318 TGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAATCTCAAG 92561269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277400263899