Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22 123 2e-23 seq48 120 2e-22 seq26 120 2e-22 seq23 105 5e-18 seq9 98.7 8e-16 seq7 96.9 3e-15 seq31 95.1 9e-15 seq16 95.1 9e-15 >seq22 Length=149736546 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| |||||||| ||||| ||||| Sbjct 122457130 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 122457071 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 122457070 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 122457011 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| || | || || || | || ||| Sbjct 122457010 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATAGTGTCCGAGGGTTCAACC 122456951 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||||| |||||||||||| Sbjct 122456950 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 122456900 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 |||| || | |||||||| ||| || ||| ||| |||||||| ||||| | ||| | | Sbjct 6329999 CCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTTAGACAAA 6330058 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 | | | || |||| ||||||||| ||||| | ||| | ||| ||||| | |||| Sbjct 6330059 GTCAGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATT 6330118 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC 48722 || ||||| || ||||| |||||| | | || || || | || |||| Sbjct 6330119 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTGG 6330178 Query 48723 ACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | ||| || ||||| ||||| | || || |||||||||||||||||| Sbjct 6330179 AGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 6330226 >seq48 Length=23158 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| |||||||| ||||| ||||| Sbjct 14485 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 14544 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 14545 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 14604 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | || || || | || ||| Sbjct 14605 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 14664 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||||| |||||||||||| Sbjct 14665 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 14715 >seq26 Length=124595110 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| |||||||| ||||| ||||| Sbjct 83409886 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 83409827 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 83409826 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 83409767 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | || || || | || ||| Sbjct 83409766 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 83409707 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||||| |||||||||||| Sbjct 83409706 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 83409656 >seq23 Length=145441459 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| |||||||| ||||| ||||| Sbjct 51458286 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 51458227 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | || |||| ||||||||| ||||| | ||| | || ||||| | ||| Sbjct 51458226 AAAGTCTGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTACTGATCAGGAGGA 51458167 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| ||| || || || | || ||| Sbjct 51458166 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTGTCCGAGGGTTCAACC 51458107 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||| | |||||||||||| Sbjct 51458106 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCATCGTG 51458056 >seq9 Length=156508116 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| ||||||| ||||| ||||| | | | || | || Sbjct 132148672 CAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 132148731 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| ||||| ||||| | ||| ||||| | |||| || ||||| || Sbjct 132148732 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAAGTCCTTCCTTATC 132148791 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||| |||||| | | || || || | || ||||| | || || || Sbjct 132148792 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGT 132148851 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| ||||| | || || ||||| |||||||||||| Sbjct 132148852 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 132148888 >seq7 Length=182113224 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| |||||||| ||||| ||||| Sbjct 145510430 CCACCCCAAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 145510489 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||| ||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 145510490 AAAGTCCGGCCATCTTCCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 145510549 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||| |||||| | | || || | | || ||| Sbjct 145510550 ATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACC 145510609 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||||||||||||||| || Sbjct 145510610 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCATG 145510660 >seq31 Length=124902244 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||| ||| || ||| ||| |||||||| ||||| ||| | | | | | | || Sbjct 45858334 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACAAAGTACAGCCATC 45858393 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| ||||| ||||| | ||| | ||| | |||| || ||||| || Sbjct 45858394 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTAATCAGGAGGAATTCCTTCCTTATC 45858453 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||| |||||| | | || || || | || ||||| | ||| || || Sbjct 45858454 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATAGT 45858513 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| || | | || || |||||||||||||||||| Sbjct 45858514 TTTCCCTTTAAGGGTCTTCACAAAAATCTGCATCGTG 45858550 >seq16 Length=151834684 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125388034 GCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 125388093 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125388094 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 125388153 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 125388154 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 125388213 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 ||||| || || || || || || || ||||| ||||| ||||||||||| ||| Sbjct 125388214 CTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATCGTCTGT 125388268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125387123 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAC 125387182 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125387183 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 125387242 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || | ||| ||| Sbjct 125387243 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 125387302 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || ||||| || |||| || || ||||| ||||||||| Sbjct 125387303 TCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 125387350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125386438 GCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 125386497 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125386498 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 125386557 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 125386558 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCTATGGTGTCACTGGGCTCGAC 125386617 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || || || |||| || || ||||| ||||||||| Sbjct 125386618 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 125386666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125386894 GCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 125386953 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125386954 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 125387013 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 125387014 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCTATGGTGTCACTGGGCTCGAC 125387073 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || || || |||| || || ||||| ||||||||| Sbjct 125387074 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 125387122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125387578 GCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 125387637 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125387638 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 125387697 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 125387698 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCTATGGTGTCACTGGGCTCGAC 125387757 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || || || |||| || || ||||| ||||||||| Sbjct 125387758 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 125387806 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| |||||| || || ||||| || || Sbjct 125386210 GCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 125386269 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 125386270 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 125386329 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 125386330 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCTATGGTGTCACTGGGCTCGAC 125386389 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 125386390 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 125386437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936638965861