Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq25 159 6e-34 seq86 145 1e-29 seq30 141 2e-28 seq23 100 5e-16 seq9 84.2 4e-11 >seq25 Length=129401213 Score = 159 bits (176), Expect = 6e-34 Identities = 183/242 (76%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| | || ||||| | || ||||| ||| ||||| || ||||| || ||| Sbjct 84977428 CTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGCTTGAGCTGCGCCACTTGCTCC 84977485 Query 241448 CGCAGAACGGAC--GCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTT 241505 || || | ||| || | | | ||||| || ||||| |||| |||||| |||||| | Sbjct 84977486 CGTAGGA--GACCGGCAGCACTCGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACCT 84977543 Query 241506 TCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGC 241565 | |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | Sbjct 84977544 TGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCC 84977603 Query 241566 GGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAG 241625 |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || | Sbjct 84977604 TGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGG 84977663 Query 241626 AC 241627 || Sbjct 84977664 AC 84977665 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 70700025 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 70699966 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 70699965 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 70699906 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 70699905 TTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 70699846 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| || ||||||||||| || ||| Sbjct 70699845 ATGCGTTCTTGCGTGTCCATGTCGATGGGCGAC 70699813 >seq86 Length=171859 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 26195 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 26136 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 26135 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 26076 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 26075 TTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 26016 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| || ||||||||||| || ||| Sbjct 26015 ATGCGTTCTTGCGTGTCCATGTCGATGGGCGAC 25983 >seq30 Length=120421639 Score = 141 bits (156), Expect = 2e-28 Identities = 260/375 (69%), Gaps = 7/375 (2%) Strand=Plus/Minus Query 48003 TCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGG 48062 |||| || ||||| ||||||||| |||| ||||| ||||||| ||||||| || | Sbjct 12680333 TCATCCCGATGAGCTTCACGGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTAACCG 12680274 Query 48063 CTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGT-TGCGCAGGTGCTTGGCA 48121 | | |||| || || | ||| || || |||| ||| |||||||||| Sbjct 12680273 CGGTAGTGATTATCTCTTTGACCCTCTGCTCCGACGGCTTGTGTGC-CAGGTGCTTGA-- 12680217 Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 | | || |||||||||||||| ||| || || ||||| | ||| || ||| | ||||| Sbjct 12680216 -ACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAA 12680158 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | |||| | |||||||| || |||| || ||||| || Sbjct 12680157 AATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAAGAACCG 12680098 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 || |||||||| || || || || || || || | || ||||| | | ||| | Sbjct 12680097 GAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCAGCCTCT 12680038 Query 48302 TTGTCTGAGATCCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 ||||| |||||| | ||| |||||||| ||||||||||| | || ||||| || || Sbjct 12680037 TTGTCCCCAATCCAGCGCAAG-GCCCAGTCAGCCTTCTTCTTCACACAAGGCATAGTTTC 12679979 Query 48361 TATGGCCCGGAAGAG 48375 || || |||||| Sbjct 12679978 AATAGCATTGAAGAG 12679964 Score = 129 bits (142), Expect = 1e-24 Identities = 341/519 (66%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 47852 ACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAG 47911 |||| ||||||||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 3353918 ACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCCATAAAATCAAAG 3353859 Query 47912 GGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCG----C 47967 || || || | | | | | || | || | |||| | || || ||| | | Sbjct 3353858 GGATTTTCTGCCTGAAAAATCTTTGAGAATCCAA---GTTCTA-CAAGTAATCTGTCAGC 3353803 Query 47968 GACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAA 48027 || |||| ||||| | | | | | |||||| || |||||| || ||||| Sbjct 3353802 TACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCAATGAGGCCAACAGGCAA 3353743 Query 48028 AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCG 48087 || | ||| | |||||||| ||| || || || || || | | || | | | || | Sbjct 3353742 GGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTCCCTCACTCT 3353683 Query 48088 GGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTG 48147 | ||||| || |||| | | ||| || |||||||||||| | ||| Sbjct 3353682 GTCTTCTGAAGGCTTGTACTGAAA--------CAT----CAGGCAGGCAAAGTCACAGTG 3353635 Query 48148 CAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCT 48207 | ||||| |||| |||||| || | || || || || |||||||||| || || Sbjct 3353634 AAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCT 3353575 Query 48208 CTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGC 48267 || || |||||||| ||||| || || || ||||||||| | || || ||||| || || Sbjct 3353574 CTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCACAGCAGC 3353515 Query 48268 GAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCA 48327 || || | || || || |||| || ||| | |||| |||||| || ||| | Sbjct 3353514 AAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAGAGCCTA 3353455 Query 48328 GTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || ||||| | ||||||| || || || || Sbjct 3353454 GTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 3353416 >seq23 Length=145441459 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || || ||||||||||||||| |||||| ||||||||||| ||| Sbjct 102459577 GTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 102459518 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||||| |||||||||||||| |||| |||||||| |||| Sbjct 102459517 TTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTCCGTCTGG 102459458 Query 213648 GAC 213650 ||| Sbjct 102459457 GAC 102459455 >seq9 Length=156508116 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 95050409 TTCACTTTTTCCTCTAGCCGAGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 95050468 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || ||||| |||||||||| Sbjct 95050469 GCAATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGAGACTCCATGTCG 95050528 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 95050529 ATAGGGGAC 95050537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530389658880